Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01980 ATGAAAGGTGAGAAAATTGATTATGAAGCAGTTAGCACTGACAAAGATGACAAGGATGGGCAAGGTCATGTTTTGTCATCACATGTGGATGTTGACACCAATACTCAAGCTGAGAATACATCAGTATCTATAAACAAGAAAGTGAAGGTCGAAAGTGAGGAAGCTAGACCAAAGATCATTGCCCCACCTGGCACTGGTCATAAAATATATGAGATTGATCCATCTTTGCAAGCTCACCGTGCTCATCTTGACTTCCGTTATGGACAATATAAGAGATTGCATGAAGAAATTAACAAGTATGAAGGTGGTCTGGATGCATTTTCTCGTGGTTATGAAAAATTTGGCTTCACCCGCAGTGCTACAGGCATTACTTACAGAGAGTGGGCACCTGGAGCAACGTCAGCAGCATTAATTGGAGATTTCAACAACTGGAATCCAAATGCAGATGTAATGACTCGGAATGAATTTGGTGTGTGGGAGATCTTCTTGCCAAACAATGTGGATGGTTCACTGCCAATTCCTCATGGTTCTCGAGTCAAGATCCGCATGGAAACTCCGTCTGGAATCAAAGATTCAATCCCTGCTTGGATAAAGTTCTCTGTACAGGCTCCTGGTGAAATTCCATATAATGGTATATACTATGATCCACCAGAAGAGGAAAAATATGTCTTCAAATATCCACAGCCAAAGAGACCAAAATCACTTAGAATATATGAATCACATGTTGGAATGAGTAGTTCGGAACCAAAAATCAATACGTATGTCAACTTTAGAGATGAAGTGCTACCTCGCATTAAAAGGCTTGGCTATAATGCTGTCCAGATTATGGCTATTCAAGAGCATTCTTATTATGCTAGCTTTGGGTACCATGTTACAAATTTCTTTGCACCTAGCAGCCGGTTTGGAACTCCGGATGATCTCAAGTCTCTCATAGACAAAGCCCATGAATTAGGCCTGCTTGTTCTGATGGATATTGTACATAGTCATGCATCAAATAATACACTGGATGGGCTGAACATGTTTGATGGAACTGATACTCATTACTTCCATGGTGGGTCACGAGGTTATCATTGGATGTGGGATTCTCGTCTTTTTAACTATGGAAGCTGGGAGGTTCTAAGGTATCTGCTTTCAAATGCAAGATGGTGGCTGGAAGAATATAAGTTTGATGGGTTTCGATTTGATGGTGTCACATCAATGATGTATACTCATCATGGATTGGGGGTTGGTTTTACTGGAAATTACAATGAGTACTTCGGTTTTGCAACTGATGTTGATGCTGTGGTTTACCTGATGCTGGTTAATGATGTCATTCATGGGCTCTTTCCTGAAGCTATTACTATTGGTGAAGATGTCAGTGGAATGCCAACATTTTGCCTTCCTACACAAGATGGTGGGGTTGGCTTTGACTACCGCCTGCACATGGCCATAGCAGACAAGTGGATTGAGATTCTCAAGAAGAAAGATGAAGACTGGGAAATGGGTGATATAGTTCACTCTCTCACAAACAGAAGGTGGCTAGAAAAATGTGTAGCATATGCTGAAAGTCATGACCAAGCTTTGGTTGGGGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGACTTCATGGCCTTAGATAGACCATCTACTCCTCTCATAGATCGTGGTATAGCACTACACAAGATGATTAGGCTTATCACAATGGGTCTTGGTGGGGAAGGGTATTTGAATTTTATGGGGAATGAATTTGGCCATCCTGAATGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGTGCAGTAATTCCCGGGAATAATTACAGTTATGATAAATGTAGGCGTAGATTTGACTTGGGGGATGCAGACTATCTTAGATATAGGGGGATGCAAGAATTTGATCAAGCTATGCAGCATCTGGAAGAAAGGTTTGGTTTCATGACTTCTGAGCACCAATATATTTCTCGGAAACATGAGGGTGACAAAGTTATAGTGTTCGAAAGGGGCAAACTTGTATTTGTCTTCAATTTTCATTGGTACAACAGCTATTCAGATTACAGAGTTGGATGCTTAAACCCAGGGAAATACAAGATTGTCTTGGATTCAGATGATCCCTTGTTTGGTGGCTTCAATAGACTCAATCCCACAGCCGAGTACTTCACCTCTGATGGATGGTATGACGACCGACCCCGATCTTTTCTCGTGTATGCACCTTCTAGAACAGCTGTGGTGTATGCCCTCGCAGATGAAGCTGAACCAGAGCCAAAGCTAAAACCAGTTGAAGTGCTAGTGATGGAACCAGAGCTAGAGCCAGAGCCAAAGCAAGTGCTAGAGTCAGAGTCAAAGCCAGAGCCAGTTGAAGCAGAAGTTGAACCCTGA 2373 0.4197 MKGEKIDYEAVSTDKDDKDGQGHVLSSHVDVDTNTQAENTSVSINKKVKVESEEARPKIIAPPGTGHKIYEIDPSLQAHRAHLDFRYGQYKRLHEEINKYEGGLDAFSRGYEKFGFTRSATGITYREWAPGATSAALIGDFNNWNPNADVMTRNEFGVWEIFLPNNVDGSLPIPHGSRVKIRMETPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFKYPQPKRPKSLRIYESHVGMSSSEPKINTYVNFRDEVLPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNTLDGLNMFDGTDTHYFHGGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLGVGFTGNYNEYFGFATDVDAVVYLMLVNDVIHGLFPEAITIGEDVSGMPTFCLPTQDGGVGFDYRLHMAIADKWIEILKKKDEDWEMGDIVHSLTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPLIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPTGAVIPGNNYSYDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEERFGFMTSEHQYISRKHEGDKVIVFERGKLVFVFNFHWYNSYSDYRVGCLNPGKYKIVLDSDDPLFGGFNRLNPTAEYFTSDGWYDDRPRSFLVYAPSRTAVVYALADEAEPEPKLKPVEVLVMEPELEPEPKQVLESESKPEPVEAEVEP 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01980 790 SUPERFAMILY E set domains 107 216 IPR014756 -
Aip06g01980 790 PIRSF GlgB 7 754 IPR037439 GO:0003844|GO:0005978
Aip06g01980 790 CDD AmyAc_bac_euk_BE 218 633 - -
Aip06g01980 790 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 2-1, CHLOROPLASTIC/AMYLOPLASTIC 42 750 - -
Aip06g01980 790 MobiDBLite consensus disorder prediction 1 23 - -
Aip06g01980 790 SUPERFAMILY (Trans)glycosidases 226 640 IPR017853 -
Aip06g01980 790 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 113 196 IPR004193 GO:0004553|GO:0005975
Aip06g01980 790 SMART aamy 252 612 IPR006047 GO:0005975
Aip06g01980 790 Gene3D - 647 754 IPR013780 -
Aip06g01980 790 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 42 750 IPR037439 GO:0003844|GO:0005978
Aip06g01980 790 Gene3D Glycosidases 73 642 - -
Aip06g01980 790 Pfam Alpha amylase, catalytic domain 262 334 IPR006047 GO:0005975
Aip06g01980 790 Pfam Alpha amylase, C-terminal all-beta domain 651 744 IPR006048 GO:0003824|GO:0005975|GO:0043169
Aip06g01980 790 SUPERFAMILY Glycosyl hydrolase domain 647 746 - -
Aip06g01980 790 MobiDBLite consensus disorder prediction 766 790 - -
Aip06g01980 790 CDD E_set_GBE_euk_N 121 214 - -
Aip06g01980 790 Gene3D Immunoglobulins 109 221 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01980 Aip-Chr6 84082939 84097709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01980 14 747 Glycoside Hydrolase AT5G03650 82.065 0.0 1284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01980 K00700 - gmx:100816963 1407.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01980 06 84082939 84097709 Aip06g01980 06 84082939 84097709 ECH