Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01915 ATGGCGGAGCACTTGGCATCGATATTCGGTACGGAGAAGGACAGAGTGAACTGCCCCTTCTACTTCAAGATCGGGGCCTGCAGGCATGGCGACCGCTGCTCCAGGCTTCACACAAAGCCCACCATAAGCCCGACGCTACTCCTCTCCAACATGTACCAGAGGCCCGACATGATTACCCCTCTCCTCCCTCCAAATCCTAACCAGCCCCAGTCTCAGTCCCTTGATCCCGACAAGGTTCAAGACCATTTTGAGGACTTCTACGAGGACCTCTTCGAGGAGCTCAGCAAGTACGGCCAGATTCAGAGCCTCAATATTTGCGACAATCTCGCTGATCACATGGTTGGGAACGTGTATGTTCAGTTCAAAGAGGAGGACCATGCTGCCAATGCCTTAATGAATCTCACTGGGAGGTTTTATTCAGGTCGACCCATCATTGTTGACTTCTCTCCTGTTACTGATTTTCGGGAAGCTACTTGTAGGCAGTATGAGGAAAACGTTTGCAATAGAGGTGGCTACTGCAACTTCATGCACCTAAAAAAGATTAGCAGGGATTTGAGGAAGAAGTTATTTGGAAGAAACAGGAGATGGAATCGTAGTAGAAGTAGAAGCAGAAGCCGAAGTCCTCCTAGGAGTAGAAACTATGATGAGCGTTCACATGGTCGTGGTTCTAGTAGAAGGGATTCTGATAGGTCCCATGGTCACCATGGTAGGAGGCCTAGAAGCCGTAGTCCTCGACGTCGAGGAAGGCGAAGTAGAAGTCCAGCGGGGAGGGATAGGAGTCCAGTCAGAGAAAGTAGTGCAGAAAGAAGGGCTAAAATAGAGCAATGGAACAGGGAGAAGGAGCAGGGAGATTCTGGTAACCAGAACAATGCGAATGGTAATGATTACAAGGAACCTAACGTCCCAAAAAATGGTAATGAATCCGATAATCATCAAACATATCAGCATAATAGTGATTAG 960 0.4833 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLLLSNMYQRPDMITPLLPPNPNQPQSQSLDPDKVQDHFEDFYEDLFEELSKYGQIQSLNICDNLADHMVGNVYVQFKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRKKLFGRNRRWNRSRSRSRSRSPPRSRNYDERSHGRGSSRRDSDRSHGHHGRRPRSRSPRRRGRRSRSPAGRDRSPVRESSAERRAKIEQWNREKEQGDSGNQNNANGNDYKEPNVPKNGNESDNHQTYQHNSD 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01915 319 Gene3D - 43 150 IPR012677 -
Aip06g01915 319 SUPERFAMILY RNA-binding domain, RBD 82 154 IPR035979 GO:0003676
Aip06g01915 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 151 IPR000504 GO:0003723
Aip06g01915 319 MobiDBLite consensus disorder prediction 231 253 - -
Aip06g01915 319 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Aip06g01915 319 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Aip06g01915 319 PRINTS U2 auxiliary factor small subunit signature 80 95 IPR009145 GO:0000398|GO:0003723|GO:0089701
Aip06g01915 319 PRINTS U2 auxiliary factor small subunit signature 108 130 IPR009145 GO:0000398|GO:0003723|GO:0089701
Aip06g01915 319 PRINTS U2 auxiliary factor small subunit signature 135 159 IPR009145 GO:0000398|GO:0003723|GO:0089701
Aip06g01915 319 PRINTS U2 auxiliary factor small subunit signature 170 182 IPR009145 GO:0000398|GO:0003723|GO:0089701
Aip06g01915 319 ProSiteProfiles Zinc finger C3H1-type profile. 153 180 IPR000571 GO:0046872
Aip06g01915 319 MobiDBLite consensus disorder prediction 208 230 - -
Aip06g01915 319 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Aip06g01915 319 PANTHER RNA RECOGNITION MOTIF DOMAIN, EUKARYOTE-RELATED 1 314 - -
Aip06g01915 319 SMART c3hfinal6 153 179 IPR000571 GO:0046872
Aip06g01915 319 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Aip06g01915 319 MobiDBLite consensus disorder prediction 195 319 - -
Aip06g01915 319 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Aip06g01915 319 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 178 IPR000571 GO:0046872
Aip06g01915 319 CDD RRM_U2AF35B 44 150 - -
Aip06g01915 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 144 IPR000504 GO:0003723
Aip06g01915 319 SMART rrm2_1 72 147 IPR003954 GO:0003676
Aip06g01915 319 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 314 IPR009145 GO:0000398|GO:0003723|GO:0089701
Aip06g01915 319 MobiDBLite consensus disorder prediction 58 77 - -
Aip06g01915 319 MobiDBLite consensus disorder prediction 282 319 - -
Aip06g01915 319 MobiDBLite consensus disorder prediction 254 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01915 Aip-Chr6 71534791 71537165 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01915 K12836 - gmx:100811622 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01915 06 71534791 71537165 Aip06g01915 06 71534791 71537165 ECH