Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01842 ATGGTGAAGGCCTACCTCCGTTACGAGCCGGCGGCATCGTTCGGCGTTATCGCCTCCGTCGAGTCCAACATAGCCTATGACAGCTCCGGCAAGCACCTCCTCTCTCCGGCGCTCGAGAAGGTCGGCGTCTGGCACGTCCGCCCAGGCATCTGCACCAAAACCCTAACCCCTTCCCCTGCCTCTCGCGTTTCCTCCCTCGCCGTCACGTCCATCGCCCCTGCCCCTTCTTCTTCCCAGGTAGCGGTTGGTTATGCTGATGGTAGCATAAGGATTTGGGACTCTGATGCGGGAACTTGTGAGACCACGCTGAGTGGGCACAAGGGAGCTGTCACTGCTCTTCGTTACAACAAGGCTGCTTCGGTGCTTGCTTCCGGGAGCAAGGACAATGATATCATTTTGTGGGATGTTGTTGGTGAGACCGGCATGTTTCGCCTCCGCGGGCATCGTGACCAGGTGACTGATGTAGTATTTGTGGGGTCTGGGAAAAAGCTAGTTAGTTCCTCGAAAGACAAGTTCTTGAGAGTGTGGGATCTAGACAGCGAGTACTGTATACAAATTGTTGGTGGTCATCATAGTGAAATTTGGTCTATAGATGTTGATCCTGAGGAAAGGTATCTGGTCACTGGTTCTGCAGACAAGGTGCTCCGGTTTTATTCAATCAAGCATGAGTCTGTGGATGGACAATCTGTAAATGGGGACAGTGCAGTGGTTGGTGATGGAGGCTCTTCTGTTCAAAACAAATGGGAAGTTTTGAGGCAGTTTGGCGAGATTCAGCGGCAAAGCAAGGAGAGAGTGGCAACTGTGCAGTTCAGTAAGGCAGGGAAACTGCTAGCTTGTCAGGTTGCAGGAAAGACAGTTGAGATATACCGTATTCTGGATGAGGCTGAGGCGAAGAAGAAGGCAAGACGTCGGGTTCACCGCAAGAAAGAGAAGAAACATGCCAAAGAGGCTTTGGGGGGAACTGAAAATGGAGACATGAATAAAGGGGTTAAAGGAGATATAACTTCTGAGACTCAAGGGCTCATAGAAACAAGTAACCCTGCAGTTACTGTGCCCGATGTTTTTAAGCTACTCCATACTCTTAGAGCTAGCAAAAAGATATGCTCCATATCGTTTTGTCCAGTCACTCCTAAGAATTCACTGGCTAGTTTAGCATTGTCCTTGAACAATAATCTACTTGAGTTTTACTCCATTGAAAGCAGTGAAGCCACAAAAACACTTGCTATTGAGCTACAAGGACACCGTTCTGATGTTAGAAGTGTCACACTTAGTTCGGACAACAGTCTTTTGATGTCAACTAGTCACAATGCAGTTAAGATTTGGAACCCTAGCACTGGGTCATGCCTAAGGACAATCGATTCTGGGTATGGACTGTGCAGTTTAATTCTGCCCTCTAACAAGTATGGGCTTGTTGGAACTAAAGATGGAACCATAGAAATTATTGACATTGGAAGTGGCACTCGTTTAGAAGCAATGGAAGCTCATGGTGCTTCTGTCCGTTCAATTGCTCTCCTGCCAGATAAAAATGGTTTTGTCACGGGAAGTGCTGATCATGATGTTAAGTTTTGGGAGTACCAGTTGAAGCAAAAACCCGGTCAAGCTACTAAGCAACTTAGTGTGTCAAACGTCAGTACAATGAAGATGAATGATGATGTTCTTGTTGTTGCAATAAGTCCCGATTCTAAATATATTGCTGTGGCGCTGTTAGATGGTACTGTGAAGGTTCACTTCGCAGACACGTTCAAATTTTTCCTTTCATTATATGGCCACAAGCTGCCTGTTCTTTGTATGGATATCTCATCAGATGGAGATTTAATTGTGACTGGATCAGCAGACAAAAATTTGAAGATTTGGGGTCTGGATTTTGGTGATTGTCATAAATCCATTTTTGCGCATGCTGACAGTGTTATGGCAGTGCAATTTGTTCCGAAGACACACTATGTGTTTAGTGTTGGGAAAGATCGGCTGATAAAATATTGGGATGCTGATAAATTTGAATTGCTGTTGACTCTCGAAGGACATCATGCAGATGTCTGGTGTCTTGCAATAAGTAATCGTGGTGATTTCGTGGTCACTGGATCTCATGACCGATCAATCCGCCGATGGGATCGTACAGAAGAGCAGTTTTTCATTGAGGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGAGGCTGATCTTGACAATGCTTTTGAAAACAAGTATGCACCAAAGGAAGAAGTACCGGAGGAGGGTGCTGTGGCTTTAGCTGGGAAAAAAACCCAGGAGACCCTTACTGCCAGTGACTTAATTATCGAGAGATTAGACATAGCAGAAGCTGAGAAAAAGCGTATTGCAGAACATGAGGAGGAGAAAAATAATAAAAATGCTGCTGCATTCCAAGCAAATCCGCTTATGAATGGCCTTTCCCCTTCTGATTATGTTCTTAGTGCATTCTCAGATATTCACTCCAATGATCTTGAGCAAACATTATTGGCTTTACCCTTTTCTGATGCTTTGAAACTGCTGTCATACTTGAAGGATTGGACTTCATATTCAGATAAGGTTGAGCTTATTTGCCGGATAGGAACACTACTGCTGCAGACACATTATAATCAGCTGCTTACTACACCGGCTGCTAGACCTATTTTGACTGCTTTCAGCGACATTTTTTATGAACATGTCAAGGGATGGAAAGATATCTTTGGTTTTAACCTTGCAGCGATGGATCATATCCAGCAAATTCTGGCTACGAGATCAGATGCTATTTTCCGTGATGCAAGATCTAAACTACTAGAGATACGTGCTAAACAATCGAAACGTGTAGCAGAAAGGTCCGACACTGGAGAAGGGAAGAGGAGGAAGAAGTAG 2850 0.4495 MVKAYLRYEPAASFGVIASVESNIAYDSSGKHLLSPALEKVGVWHVRPGICTKTLTPSPASRVSSLAVTSIAPAPSSSQVAVGYADGSIRIWDSDAGTCETTLSGHKGAVTALRYNKAASVLASGSKDNDIILWDVVGETGMFRLRGHRDQVTDVVFVGSGKKLVSSSKDKFLRVWDLDSEYCIQIVGGHHSEIWSIDVDPEERYLVTGSADKVLRFYSIKHESVDGQSVNGDSAVVGDGGSSVQNKWEVLRQFGEIQRQSKERVATVQFSKAGKLLACQVAGKTVEIYRILDEAEAKKKARRRVHRKKEKKHAKEALGGTENGDMNKGVKGDITSETQGLIETSNPAVTVPDVFKLLHTLRASKKICSISFCPVTPKNSLASLALSLNNNLLEFYSIESSEATKTLAIELQGHRSDVRSVTLSSDNSLLMSTSHNAVKIWNPSTGSCLRTIDSGYGLCSLILPSNKYGLVGTKDGTIEIIDIGSGTRLEAMEAHGASVRSIALLPDKNGFVTGSADHDVKFWEYQLKQKPGQATKQLSVSNVSTMKMNDDVLVVAISPDSKYIAVALLDGTVKVHFADTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNLKIWGLDFGDCHKSIFAHADSVMAVQFVPKTHYVFSVGKDRLIKYWDADKFELLLTLEGHHADVWCLAISNRGDFVVTGSHDRSIRRWDRTEEQFFIEEEKEKRLEEMFEADLDNAFENKYAPKEEVPEEGAVALAGKKTQETLTASDLIIERLDIAEAEKKRIAEHEEEKNNKNAAAFQANPLMNGLSPSDYVLSAFSDIHSNDLEQTLLALPFSDALKLLSYLKDWTSYSDKVELICRIGTLLLQTHYNQLLTTPAARPILTAFSDIFYEHVKGWKDIFGFNLAAMDHIQQILATRSDAIFRDARSKLLEIRAKQSKRVAERSDTGEGKRRKK 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 629 670 IPR001680 GO:0005515
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 492 524 - -
Aip06g01842 949 CDD WD40 99 524 - -
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 68 102 IPR001680 GO:0005515
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 587 621 - -
Aip06g01842 949 SUPERFAMILY WD40 repeat-like 23 398 IPR036322 GO:0005515
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 103 136 - -
Aip06g01842 949 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 948 - -
Aip06g01842 949 Coils Coil 768 791 - -
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 492 524 IPR001680 GO:0005515
Aip06g01842 949 SUPERFAMILY WD40 repeat-like 265 709 IPR036322 GO:0005515
Aip06g01842 949 Gene3D - 58 315 IPR015943 GO:0005515
Aip06g01842 949 Gene3D - 454 655 IPR015943 GO:0005515
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 451 IPR001680 GO:0005515
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 103 136 IPR001680 GO:0005515
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 221 IPR001680 GO:0005515
Aip06g01842 949 SMART WD40_4 445 482 IPR001680 GO:0005515
Aip06g01842 949 SMART WD40_4 48 93 IPR001680 GO:0005515
Aip06g01842 949 SMART WD40_4 539 577 IPR001680 GO:0005515
Aip06g01842 949 SMART WD40_4 580 619 IPR001680 GO:0005515
Aip06g01842 949 SMART WD40_4 485 524 IPR001680 GO:0005515
Aip06g01842 949 SMART WD40_4 180 219 IPR001680 GO:0005515
Aip06g01842 949 SMART WD40_4 404 442 IPR001680 GO:0005515
Aip06g01842 949 SMART WD40_4 138 177 IPR001680 GO:0005515
Aip06g01842 949 SMART WD40_4 96 135 IPR001680 GO:0005515
Aip06g01842 949 SMART WD40_4 664 703 IPR001680 GO:0005515
Aip06g01842 949 SMART WD40_4 247 290 IPR001680 GO:0005515
Aip06g01842 949 SMART WD40_4 622 661 IPR001680 GO:0005515
Aip06g01842 949 Coils Coil 292 312 - -
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 628 IPR001680 GO:0005515
Aip06g01842 949 Pfam Dip2/Utp12 Family 806 906 IPR007148 -
Aip06g01842 949 Gene3D - 349 453 IPR015943 GO:0005515
Aip06g01842 949 MobiDBLite consensus disorder prediction 302 330 - -
Aip06g01842 949 ProSitePatterns Trp-Asp (WD) repeats signature. 164 178 IPR019775 -
Aip06g01842 949 Gene3D - 657 721 IPR015943 GO:0005515
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 180 - -
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 221 - -
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 186 IPR001680 GO:0005515
Aip06g01842 949 Pfam WD domain, G-beta repeat 410 442 IPR001680 GO:0005515
Aip06g01842 949 Pfam WD domain, G-beta repeat 61 93 IPR001680 GO:0005515
Aip06g01842 949 Pfam WD domain, G-beta repeat 585 618 IPR001680 GO:0005515
Aip06g01842 949 Pfam WD domain, G-beta repeat 666 703 IPR001680 GO:0005515
Aip06g01842 949 Pfam WD domain, G-beta repeat 183 218 IPR001680 GO:0005515
Aip06g01842 949 Pfam WD domain, G-beta repeat 493 523 IPR001680 GO:0005515
Aip06g01842 949 Pfam WD domain, G-beta repeat 97 135 IPR001680 GO:0005515
Aip06g01842 949 Pfam WD domain, G-beta repeat 144 177 IPR001680 GO:0005515
Aip06g01842 949 ProSitePatterns Trp-Asp (WD) repeats signature. 122 136 IPR019775 -
Aip06g01842 949 PRINTS G protein beta WD-40 repeat signature 122 136 IPR020472 -
Aip06g01842 949 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Aip06g01842 949 PRINTS G protein beta WD-40 repeat signature 606 620 IPR020472 -
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats profile. 671 703 IPR001680 GO:0005515
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 671 703 - -
Aip06g01842 949 CDD WD40 407 703 - -
Aip06g01842 949 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 629 661 - -
Aip06g01842 949 PANTHER WD REPEAT-CONTAINING PROTEIN 3 1 948 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01842 584 712 Miscellaneous Gene Families AT5G08390 27.132 9.13e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01842 K14556 - gmx:100775810 1584.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01842 06 52522183 52529528 Aip06g01842 06 52522183 52529528 ECH