Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01780 ATGGCCCCTTCAAGCAATGCTGAGTGGCCACCTTCACCTGGCTACTGGCCAAGTTCCAAATTCAAGACTATGAACTTTTACAAAGGTTTTAGGAACCTTTGGGGCCCCCAGCACCAAAGAATAGAACAAAATGCATTAACAATTTGGCTTGATAGAACCTCAGGAAGTGGCTTCAAGTCTGTTGCTCCGTTTCGATCCGGATACTTTGGTGCTTCCATTAAGCTCCAACCTGGCTACACTGCTGGAGTTATAACAGCTTTCTATCTTTCCAACAATGAAGCTCATCCTGGATTCCATGATGAAGTAGACATTGAGTTTCTTGGGACTACGTTTGGAAAGCCTTACACTTTGCAGACCAATGTTTATATCAGAGGAAGTGGAGATGGTCAAATTATAGGCAGAGAGATGAAGTTCCATCTATGGTTTGATCCAACCAAAGATTTTCATCACTATGCTATTCTCTGGACTCCTAAGGAAATAATATTCTTTGTGGATGATGTGCCAATAAGGAGGTACCCGAGGAAAAGTGCAGAGACATTTCCAATGAGGCCAATGTGGCTTTATGGTTCAATATGGGATGCATCATCATGGGCAACCGAGGATGGCAAGTACAAAGCTGATTATAGGTACCAACCCTTTGTGGCAAGGTACACAAACTTCAAGGCCAGTGGTTGCACGGCGTATGCACCGCGCTGGTGCCACGCCGTCTCAGCCTCGCCCTATAGGTCCGGCGGGTTGAGTAGGCAGCAATATAGTGCCATGAGATGGGTGCAAACGTACCACATGGTTTACAACTATTGTCAAGACTCCAAAAGGGATCATAGGCTAACACCTGAGTGTTGGAGTTAA 849 0.4547 MAPSSNAEWPPSPGYWPSSKFKTMNFYKGFRNLWGPQHQRIEQNALTIWLDRTSGSGFKSVAPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGQIIGREMKFHLWFDPTKDFHHYAILWTPKEIIFFVDDVPIRRYPRKSAETFPMRPMWLYGSIWDASSWATEDGKYKADYRYQPFVARYTNFKASGCTAYAPRWCHAVSASPYRSGGLSRQQYSAMRWVQTYHMVYNYCQDSKRDHRLTPECWS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01780 282 SUPERFAMILY Concanavalin A-like lectins/glucanases 48 268 IPR013320 -
Aip06g01780 282 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 1 281 - -
Aip06g01780 282 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 1 281 IPR044791 GO:0004553
Aip06g01780 282 PIRSF EndGlu_transf 13 282 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aip06g01780 282 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 280 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Aip06g01780 282 Pfam Glycosyl hydrolases family 16 28 209 IPR000757 GO:0004553|GO:0005975
Aip06g01780 282 Gene3D - 6 280 - -
Aip06g01780 282 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 5 217 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01780 Aip-Chr6 44026408 44029146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01780 1 280 Glycoside Hydrolase AT3G44990 67.260 4.95e-141 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01780 K08235 - gmx:100796698 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01780 06 44026408 44029146 Aip06g01780 06 44026408 44029146 ECH