Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01594 ATGAAGCATGATTACGCCTTTGTTGAATTCAGCGATCCTAGAGATGCTGATGATGCAAGATACAACTTGGATGGTCGTGATGTTGATGGAAGTCGTATTATTGTGGAATTTGCGAAAGGGGTTCCTCGCGGTTCCCGTGAATATTTGGGTCGTGGTCCTCCTCCTGGAACTGGGCGTTGCTTTAACTGTGGTATTGATGGCCACTGGGCCCGAGATTGCAAAGCTGGAGACTGGAAGAACAAGTGTTATCGATGTGGGGAGAGGGGTCATATAGAAAAAAACTGCAAGAACAGTCCCAAAAAGCTGAGTAGACGTGGGCGTAGTTATTCCCGCTCTCCTGTCAGGTCACGTTCCCCAGTCAGGTCACGCTCTCCTCGTCGTGGCAGAAGCAGGGACAGGAGTTACACCCCAGAACGTAGTTACAGTCGATCAAGATCCCCAGTTAGGGGGGATCGAAGCCCAGTTCGTGATAGATCAGAGAGCCCACGCTCTAGAAGCCCTGAACCCAAAGGTAGCCCTCAGCCCTCGAAGGCAAGGAAGCATAGTCCATCACCTGATGAAGGGAGTCCACAGAAGAGAGGTGATGCATCTCCTGGCAATGAGAGGATGGTTACACAGCAAGATGGATCTGATTACAGTGATGGCCCCAGAGCAAAGAGCAGAAGCCCCGCTAGTCCAGCAGGGGATGACAGCCCAAAGGCTAATGGTCGCAGCCGCAGTCCTAGTCCCAGAGATGATGACAGAAGCCCCATTGATGACGAAGAAGACAACCAGCGTAATCTACCAAGAGGCAGTGAGTCCCCTTGA 807 0.518 MKHDYAFVEFSDPRDADDARYNLDGRDVDGSRIIVEFAKGVPRGSREYLGRGPPPGTGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRRGRSYSRSPVRSRSPVRSRSPRRGRSRDRSYTPERSYSRSRSPVRGDRSPVRDRSESPRSRSPEPKGSPQPSKARKHSPSPDEGSPQKRGDASPGNERMVTQQDGSDYSDGPRAKSRSPASPAGDDSPKANGRSRSPSPRDDDRSPIDDEEDNQRNLPRGSESP 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01594 268 MobiDBLite consensus disorder prediction 129 165 - -
Aip06g01594 268 SMART c2hcfinal6 59 75 IPR001878 GO:0003676|GO:0008270
Aip06g01594 268 SMART c2hcfinal6 81 97 IPR001878 GO:0003676|GO:0008270
Aip06g01594 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 33 IPR000504 GO:0003723
Aip06g01594 268 ProSiteProfiles Zinc finger CCHC-type profile. 59 74 IPR001878 GO:0003676|GO:0008270
Aip06g01594 268 ProSiteProfiles Zinc finger CCHC-type profile. 81 97 IPR001878 GO:0003676|GO:0008270
Aip06g01594 268 MobiDBLite consensus disorder prediction 239 261 - -
Aip06g01594 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 40 IPR000504 GO:0003723
Aip06g01594 268 SUPERFAMILY RNA-binding domain, RBD 4 59 IPR035979 GO:0003676
Aip06g01594 268 MobiDBLite consensus disorder prediction 93 268 - -
Aip06g01594 268 Gene3D - 79 131 - -
Aip06g01594 268 Gene3D - 50 78 - -
Aip06g01594 268 Gene3D - 1 48 IPR012677 -
Aip06g01594 268 PANTHER SPLICING FACTOR, PUTATIVE-RELATED 1 251 - -
Aip06g01594 268 Pfam Zinc knuckle 59 74 IPR001878 GO:0003676|GO:0008270
Aip06g01594 268 Pfam Zinc knuckle 80 97 IPR001878 GO:0003676|GO:0008270
Aip06g01594 268 SUPERFAMILY Retrovirus zinc finger-like domains 50 98 IPR036875 GO:0003676|GO:0008270
Aip06g01594 268 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 251 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01594 K12896 - gmx:100813237 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01594 06 29793603 29797065 Aip06g01594 06 29793603 29797065 ECH