Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01580 ATGGACCGCTACCCCTACTCCGAGCCCACCACCCCTGCCTCTTCCGTCCCGAGGGAAACCCTCTTTGTCTCCAACTCCAGCAACTCCCTCGTCTTCTCCAACTCCGGCAAGTCCCTCGTCGTCTCCGCCTCCGGCTCGCGCTTCGATCCGAGGAAGAAGTATGTTAGGCAGGTCACCGGCCGGCACAATGACACCGAGCTCCACCTCGCTGCCCAGCGCGGCGATGTTACTGCCGTTCGACGAATCCTTGCCGAGATCGATGATCAGATGACGGGAACCCTAAGCGGAGCTGAGTTTGATGCTGAGGTGGTGGAGATTAGGTCCGCGATCGTCAACGAAGTCAACGAATTGGGAGAGACGCCGCTGTTCACGGCCGCCGATAAGGGACACCTGGATGTCGTTAAAGAGCTTCTCCCTCACACCACCAAAGAGGCCCTTTCGTTCAAGAACCGTGCCGGCTTCTCTCCCTTGCACATTGCCGCTAAACAAGGTCATAAAGACATTGTAGAGGTGCTTCTAGACCATGATCCGGAGCTAAGCAAGACCTTTGGCCAATCAAATGCAACCCCTCTTGTCACTGCAGCTATGAAGGATCAAGCGGATGTTGTTGAGCTGTTGCTTAACAGAGATCCTAGCTTGTTGGAGATAGCTAAGTCCAATGGGAAGAACGCACTCCATTTATCTGGTCGGCAAGGGCACGTTGCTGTGGTGAAACTGTTGCTGGCCCATGATCCGCAACTCGCTCGGAGGACCGATAAGAAAGGACAAACTGCTCTGCACATGGCTGTGAAGGGGACTAGCTGTGAAGTGGTGAAGATGATTCTTAATGCAGATCCTGCAATAGTCATGTTGCCTAACAAGTTTGGAAACAATGCATTGCATATAGCCACCAGGAAGAAAAGGGTAGAGATAGTGAATGAACTGTTACTTCATCCTGACACCAATGTGAATGCCCTATCAAGAGACCAGAAAACGGCTCTTGACATTGCTGAAGGACTTCCAGTGTCCGAAGAATCCTGGGAGATAAAAGACTGCCTTGTCCGTTTTGGTGCATGTAAATCCAGTGACCTCAAGCAACCAAGGGACGAGCTGAGGAAAACTATGACACAGATCAAAATGGACGAGCTGCAGAAGTTGCACCAAAGCGGAATCCATAATGCCACAAATTCAGTAACCGTTGTGGCCTCGCTGTTTGCAACGGTTGCATTTGCAGCAATCTTCACTGTTCCTGGTGGTGATGATGATTCGGGCAAGGCCGTGGTGGTGCACACTGCGTCCTTCAAGGCCTTCTTCATATCCAATGCTATTTCGCTCTTTGTTTCACTGGTTGTTGTGGTGGTTCAGATCACGGTTGTTAGAGGGGAGACAAAGTCCGAAAGAAGAGTTACAGAAATTATCAATAAGATGCTGTGGTTGGCTTCAGTTTGCACCTCTGTTTCATTCATGGCGGCGTCTTATATAGTTGTTGGTCGCCGCAGCAGGTGGGCTGCAATCCTTATTACAGTCATAGGGACTGTTGTAACAGTTGCCGTTCTTGGTACCATGACTTACTTTGTGCTGAAATCCAAACGTCTCCGAAGAGAAAGGAAGAAGTTCAAAAGGATTAAAACATCTTCTTGGCGGTGTTCAGATTCTGAAACTGAAGTGGATCCAATTTATGCCATCTAG 1668 0.4994 MDRYPYSEPTTPASSVPRETLFVSNSSNSLVFSNSGKSLVVSASGSRFDPRKKYVRQVTGRHNDTELHLAAQRGDVTAVRRILAEIDDQMTGTLSGAEFDAEVVEIRSAIVNEVNELGETPLFTAADKGHLDVVKELLPHTTKEALSFKNRAGFSPLHIAAKQGHKDIVEVLLDHDPELSKTFGQSNATPLVTAAMKDQADVVELLLNRDPSLLEIAKSNGKNALHLSGRQGHVAVVKLLLAHDPQLARRTDKKGQTALHMAVKGTSCEVVKMILNADPAIVMLPNKFGNNALHIATRKKRVEIVNELLLHPDTNVNALSRDQKTALDIAEGLPVSEESWEIKDCLVRFGACKSSDLKQPRDELRKTMTQIKMDELQKLHQSGIHNATNSVTVVASLFATVAFAAIFTVPGGDDDSGKAVVVHTASFKAFFISNAISLFVSLVVVVVQITVVRGETKSERRVTEIINKMLWLASVCTSVSFMAASYIVVGRRSRWAAILITVIGTVVTVAVLGTMTYFVLKSKRLRRERKKFKRIKTSSWRCSDSETEVDPIYAI 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01580 555 ProSiteProfiles Ankyrin repeat profile. 117 138 IPR002110 GO:0005515
Aip06g01580 555 ProSiteProfiles Ankyrin repeat profile. 288 321 IPR002110 GO:0005515
Aip06g01580 555 Pfam Ankyrin repeats (3 copies) 252 317 IPR002110 GO:0005515
Aip06g01580 555 Pfam Ankyrin repeats (3 copies) 67 178 IPR002110 GO:0005515
Aip06g01580 555 Pfam Ankyrin repeats (3 copies) 187 244 IPR002110 GO:0005515
Aip06g01580 555 PANTHER CASKIN 374 548 - -
Aip06g01580 555 PANTHER CASKIN 32 374 - -
Aip06g01580 555 ProSiteProfiles Ankyrin repeat profile. 152 180 IPR002110 GO:0005515
Aip06g01580 555 ProSiteProfiles Ankyrin repeat region circular profile. 220 241 - -
Aip06g01580 555 Gene3D - 214 397 IPR036770 -
Aip06g01580 555 SUPERFAMILY Ankyrin repeat 67 333 IPR036770 -
Aip06g01580 555 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 374 548 - -
Aip06g01580 555 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 32 374 - -
Aip06g01580 555 ProSiteProfiles Ankyrin repeat region circular profile. 117 138 - -
Aip06g01580 555 Gene3D - 37 213 IPR036770 -
Aip06g01580 555 SMART ANK_2a 254 283 IPR002110 GO:0005515
Aip06g01580 555 SMART ANK_2a 220 249 IPR002110 GO:0005515
Aip06g01580 555 SMART ANK_2a 152 181 IPR002110 GO:0005515
Aip06g01580 555 SMART ANK_2a 288 318 IPR002110 GO:0005515
Aip06g01580 555 SMART ANK_2a 117 145 IPR002110 GO:0005515
Aip06g01580 555 SMART ANK_2a 62 91 IPR002110 GO:0005515
Aip06g01580 555 SMART ANK_2a 186 215 IPR002110 GO:0005515
Aip06g01580 555 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Aip06g01580 555 Pfam Domain of unknown function 383 488 IPR026961 -
Aip06g01580 555 ProSiteProfiles Ankyrin repeat region circular profile. 152 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01580 Aip-Chr6 29158698 29161854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01580 1 555 Miscellaneous Gene Families AT3G09550 63.912 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01580 - - gmx:100801840 715.687