Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01566 ATGTTCCCACTCGCCACTCCCACTGTGGTCTCACCCACACGGGCACCCATGGCCTCTCTCCGGCACCTGTCCCTCAATCCCCACCGTTCATCGTCACTCTCTCCATTCTCCCTCTCCTTCCCTCCTTCTTCTTCAACCACCTTTAAGTTCTCATCCATTCGCGCCTCCTCCCAAAACCACCCCAAACCCCAAAACGACGATCTCCTCTCCCGTTTCCTCAAAACCCTAATAAACCCCATCCTCTCGCCAGCCTTCGAAACCACCTGCATCGTTATCTTCGCCACCGCATTCTTTTTCATGCGCCTCCGCCATAACCCCGTCATCGCCGCCCCCCTCACCTCACCCTCCGCCACCGCCGAGACCTACACCTCCGCCGACCCCGACGCCCCCAACGAGGAGAAAGAAAAGGAAATCGAGGAGCACCTCAGCACAAACGCCTCCGACATCGAAGCCCTCCGCACTCTCATGGAGCTCAAGATCAGAGCGCGCAAAATCGACGAGGCCATTGGCATCATTGACAGGCTCATCGAGCTGGAGCCTCAAGAGTCCGAGTGGCCACTCCTCAAGGCTCACATGCACGTCTACAACGATCAAGTTGACCTTGCACGCAACGTGTTCGAGGAAATTCTCCAGAGAGACCCGCTTCGCGTTGAAGCCTACCACGGCCTCGCAATGACCGCCTTTGAGTCCAAGCTTCCGTTGAATGATTTGTTGAAGAGGATTGAGGCTGCCATGGAGCAGTGCAAGAAGCAGAACAGGAATTCAGAGGTCAGGGACTTCAAGCTCTTGATCGCGCAGATAAAGGTCATGGAGGGAGACCTTGATGCGGCTCTCAAGGCTTACCAGGATCTTGTGAAGGAGGAACCAAGGGATTTCAGGCCTTATCTTTGTCAGGGTATTATATACACCTTGCTGAAGAAGAAAGACGAAGCTGAGAAGCAGTTCAACAAGTTTCGAAGGCTCGTCCCCAAGAACCATCCTTACAAGGAATATTTCGAGGACAACATGTCTGCCACCAAGTTTTTCTCGCAGAAGGTTGAGAGGGAAGGAGCTGCTGCTCGGAGCTGA 1068 0.5431 MFPLATPTVVSPTRAPMASLRHLSLNPHRSSSLSPFSLSFPPSSSTTFKFSSIRASSQNHPKPQNDDLLSRFLKTLINPILSPAFETTCIVIFATAFFFMRLRHNPVIAAPLTSPSATAETYTSADPDAPNEEKEKEIEEHLSTNASDIEALRTLMELKIRARKIDEAIGIIDRLIELEPQESEWPLLKAHMHVYNDQVDLARNVFEEILQRDPLRVEAYHGLAMTAFESKLPLNDLLKRIEAAMEQCKKQNRNSEVRDFKLLIAQIKVMEGDLDAALKAYQDLVKEEPRDFRPYLCQGIIYTLLKKKDEAEKQFNKFRRLVPKNHPYKEYFEDNMSATKFFSQKVEREGAAARS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01566 355 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 21 348 - -
Aip06g01566 355 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 21 348 - -
Aip06g01566 355 Coils Coil 234 258 - -
Aip06g01566 355 Pfam Tetratricopeptide repeat 188 231 - -
Aip06g01566 355 Pfam Tetratricopeptide repeat 267 324 - -
Aip06g01566 355 Gene3D Tetratricopeptide repeat domain 255 340 IPR011990 GO:0005515
Aip06g01566 355 SMART tpr_5 258 291 IPR019734 GO:0005515
Aip06g01566 355 SMART tpr_5 149 182 IPR019734 GO:0005515
Aip06g01566 355 SMART tpr_5 292 325 IPR019734 GO:0005515
Aip06g01566 355 SUPERFAMILY TPR-like 161 317 IPR011990 GO:0005515
Aip06g01566 355 Gene3D Tetratricopeptide repeat domain 116 254 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01566 Aip-Chr6 28326118 28327576 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01566 - - adu:107493319 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g01566 06 28326118 28327576 Aip02g01312 02 29929967 29932908 PCT