Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01478 ATGACGGGGCTTCCCAGGGTTCGTGATCACGCATCGCTTCCATCCTCATCGTCTCATAAATCTAATAGCAGTGGTAGCAACGTATTTAGTTTGCTAGTGCGGAGAGAGATCTCGCCTAGAACGAAACACGTGGCAAAATGGAACTGGGGAGAAGCATCTAAATCAAAATCTGGTTCTAGTTCCCGTCCTAAAAATGAAGTAGCAAGAGATGCTAGGCGTGGTCTCCTATCATGGGTTGAAGCCGAGTCATTGCGGCATTTGTCAGCCAAGTATTGCCCTTTGTTGCCTCCCCCAAGGTCTACTATTGCAGCAGCATTTAGTTCAGATGGAAAAGTGCTTGCATCAACACACGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGGAGTTGCTTAAAGGTGCTAATTGGTCATAGAAGGACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCCACAAATACTTGCCAGTGGTAGCTTGGATCAAGTAGTTCGTTTATGGGACGCTAACACATCAGAGTGCATAATATCTCATCATTTCTATCGACCCATTGCATCCATTGCTTTTCATGCCAAGGGGGAAATAATTGCCGTTGCATCAGGACACAAGCTGTATATATGGCACTATAATAAGAAAGGTGAAGCAGCATCACCCGTGTTTGTGTTGAAGACAAGGCGCTCACTACGAGCCGTGCATTTTCACCCACATGCTGCACCATATCTCTTAACTGCCGAGGTCAATGATCTAGATTCCTCAGATTCATCAATGACAGAGGCAACATCACTTGGTTATTTACAATATCCCCCGCCTGCTGTTTTCGTCACAAATATTCATCCCAAGGAAAATGCTAGTTTATCAAGTGAACTACCCTACGTGTCATTACCTTTCCTCTTCATGCCACCATATCCTGTAGATGAGTCAAGACCAGAAGTCCTGCACATTAGTCCTGATGTTGGCTCCAGTAGCATGCAAATTGAATCTTCTGCGACAGGGCAGTTTCAAACGGACCCACATGCAACCGAGCAATACAATACTACAGTGTCTCCCATGGAAACATTCTCCGAGATGCCCACTAGCTCTCAAACTGGTACAGAATATCAAGCTCATGCTACTTTCTCAAATGGAATGGGTATTGGAATCAGTAACCTCAGAATGGATGGTATGGACACTGATGAAACTGAACGTGCTGAAGGATCCCAACATGGAAACTATACAAATGCCTATTCTCTTAACGGGGTGTTACATGGATTGTCTAGACAAAATAACAATCGTGAGGTTCTTCCAGAGTTTGGTCAATTTCCTCAGTTCTTTCCTGCAAGAGACCCAAGTGGATGGGAGCTACCTTTTCTGCAAGGATGGTTAATGGGTCAAAGTCAAGTTGGTGGTCCCTCAATGCTTCCTAACATGGGTGTTAGTCGTGACAGTGTAGGCCAACATATTGGTTCTTCCACATTGAGCTCTAACCATCCCACTTCTAATGCAGATATAGGAATGTCGTCTGGCATTGCCATCCCTGGATCTTCTGTTAGATCAGGTTTACGGAATCATTTTTCACAATACCGTATACCTGTATCTGAATCTGGAAATCTTGCTAGCTCTGCTAGTACCCCACATGATGGGTCTGATATTCAAACCATTATAAGTCGAATCCAGTCAGAACTTGCCACGTCAATGACTGCTGTGACGGCTGCAGAGTTGCCTTGCACCGTGAAGTTAAGAGTATGGTCGCATGACATAAAAAATCCCTGTGCTCCATTAAATGCTGACAGATGCCGTCTGACTATACCGCATGCTGTCCTTTGCAGTGAAATGGGTGCCCATTTTTCGCCGTGTGGTAGATTCTTAGCTGCCTGTGTTGCATGTATGCTCCCACATATAGAAGCTGAACCTGGATTGCAAACGCCAGTACAGCAAGAGCCTGGTATTGCAACATCACCAACTCGTCATCCAATATCAGCACACCAAGTAATGTACGAGCTGCGGATATATTCCTTAGAGGAGGCAACATTTGGAATGGTGCTTGCTTCACGAGCAATCAGAGCCGCACACTGTCTGACATCAATTCAGTTCTCACCTACGTCTGAGCACATACTACTTGCCTATGGTCGACGTCATGGTTCTCTTCTTAAAAGCATTGTAATTGATGGAGAAACGACGTTACCTATATATACAGTATTAGAGGTATATAGAGTGTCGGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGATGAGGTTAATGTGGCTTGCTTTCATCCTTTTGCCGGGGGAGGATTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGATCCTCCAGTATGATGGTGCTCATGCTGCGAATGGCACGGGACCGAGTTACTTTCCTGATGAGACCATCATTGGAATCAGTCAATGA 2400 0.4492 MTGLPRVRDHASLPSSSSHKSNSSGSNVFSLLVRREISPRTKHVAKWNWGEASKSKSGSSSRPKNEVARDARRGLLSWVEAESLRHLSAKYCPLLPPPRSTIAAAFSSDGKVLASTHGDHTVKIIDCETGSCLKVLIGHRRTPWVVRFHPLHPQILASGSLDQVVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHKLYIWHYNKKGEAASPVFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLQYPPPAVFVTNIHPKENASLSSELPYVSLPFLFMPPYPVDESRPEVLHISPDVGSSSMQIESSATGQFQTDPHATEQYNTTVSPMETFSEMPTSSQTGTEYQAHATFSNGMGIGISNLRMDGMDTDETERAEGSQHGNYTNAYSLNGVLHGLSRQNNNREVLPEFGQFPQFFPARDPSGWELPFLQGWLMGQSQVGGPSMLPNMGVSRDSVGQHIGSSTLSSNHPTSNADIGMSSGIAIPGSSVRSGLRNHFSQYRIPVSESGNLASSASTPHDGSDIQTIISRIQSELATSMTAVTAAELPCTVKLRVWSHDIKNPCAPLNADRCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEAEPGLQTPVQQEPGIATSPTRHPISAHQVMYELRIYSLEEATFGMVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRILQYDGAHAANGTGPSYFPDETIIGISQ 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01478 799 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 595 793 - -
Aip06g01478 799 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 1 798 - -
Aip06g01478 799 Pfam WD domain, G-beta repeat 130 169 IPR001680 GO:0005515
Aip06g01478 799 ProSiteProfiles Trp-Asp (WD) repeats profile. 136 178 IPR001680 GO:0005515
Aip06g01478 799 Gene3D - 82 257 IPR015943 GO:0005515
Aip06g01478 799 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 136 174 - -
Aip06g01478 799 SUPERFAMILY WD40 repeat-like 103 245 IPR036322 GO:0005515
Aip06g01478 799 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1 798 - -
Aip06g01478 799 ProSitePatterns Trp-Asp (WD) repeats signature. 156 170 IPR019775 -
Aip06g01478 799 SMART WD40_4 129 169 IPR001680 GO:0005515
Aip06g01478 799 SMART WD40_4 172 209 IPR001680 GO:0005515
Aip06g01478 799 SMART WD40_4 88 126 IPR001680 GO:0005515
Aip06g01478 799 SMART WD40_4 734 774 IPR001680 GO:0005515
Aip06g01478 799 MobiDBLite consensus disorder prediction 1 26 - -
Aip06g01478 799 MobiDBLite consensus disorder prediction 11 26 - -
Aip06g01478 799 MobiDBLite consensus disorder prediction 48 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01478 Aip-Chr6 24839704 24847415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g01478 103 270 Miscellaneous Gene Families AT5G08390 25.414 1.65e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01478 - K17985 gmx:100817857 1357.43