Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g01450 ATGGCGTCGTCATACCCTGGTTCCGTCAGTGCTGCCCAGGTGGGTTCCTACTTTGTTGGACAGTACTACCAAGTTCTGCGGCAACAGCCCAATCTGGTTCACCAGTTCTACTCTGATTCCAGCAGCATGGTTCGCGTTGACGGAGATTCCACCACGACTGCTTCCGATGTCCTGCAAATTCACTCTATCGTCACCTCACTGAATTTTATTACAATTGAGATCAAGACAATCAATTCTCTCGATTCTTGGGATGGAGGTGTGCTTGTAGTTGTCTCAGGTTCTGTCAAGATGAAGGATATCAGTGGGAGACGGAAGTTTGTTCAAACCTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTACTGAATGATGTTTTTCATTTTGTTGATGATGGAGTAGTATACTCAAATCTGGCACCAGTGGCATCCGAAAAGATTGACACACAACATGAATCAACGTCTCTTGCAGAGCCACCAGCTCCAGATTATGATTTGGAGGAAGAAGCTAGGGAATATGTCAACTCAGTGCATATAGGTGATGACCCGGTGGACAAATATAGTCTTCCTGAGCAACAGGAACAGCAGCTACATGAAGATCTTGAAGATGAAATTGTGGTTGAAGAAACTCCTGTAGAGGAGACATCACCCCGTCAAAATGTTGCACATACCACCCATGAAATCCCTGTTTCTCATGTGGAGGAGTCTTTAGAGGAGCCTCCCAAGAAAACTTACGCATCTATTTTGCAAGTTGCTAGAGGGCTGTCAACTGCGCCACAGCATACACCACAGCATTCCTTTAAAAGTGCCCCACCTCCTTCAGTATTAAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCCTCATCTACGTATGCCCCTGAGTTTGGTTCTGAGGCTAATGAGGAAGCCTATGGACTAGAAGAAGAAGGAGAAGTGACTTCTGTCTACGTGAGGAACTTGTCTCCTAATGTCACTGAATATGAGATCGACCAGGAGTTTAGAAGTTTTGGAAAAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTTTGCTATGCTTTTGTGGAGTTTGAAGACATTATTGNNTGTTCAATGTTCAAAATGCTCTTCAGACAAGTATACATAGAGGAGCGGAGACCAAACAGTGGCGGTGCGGCAGCAGCTCGTGGAGGAAGAAGGGGAAGAGGCAGAGGCAGTTATCAAACGGATGCTCCAAGGGGGCGTTTTGGTGGTAGGGGACCGGGCAGGGGAAATACTCAGGATGCATCAGAGTATACCAGACTAAGAGGACTTCTGTGCCTTGATAGAAAGGAGTTTTACATTTTGGGTGTGTCGTTTGTTGTGAAAGCGGTGTTTAGACCTGAGTTAGTTTGTTTTGCAAGTATAACATTAGTTACTTCCCCTTGA 1422 0.4536 MASSYPGSVSAAQVGSYFVGQYYQVLRQQPNLVHQFYSDSSSMVRVDGDSTTTASDVLQIHSIVTSLNFITIEIKTINSLDSWDGGVLVVVSGSVKMKDISGRRKFVQTFFLAPQEKGYFVLNDVFHFVDDGVVYSNLAPVASEKIDTQHESTSLAEPPAPDYDLEEEAREYVNSVHIGDDPVDKYSLPEQQEQQLHEDLEDEIVVEETPVEETSPRQNVAHTTHEIPVSHVEESLEEPPKKTYASILQVARGLSTAPQHTPQHSFKSAPPPSVLNHVAQPAVQQSSSSSTYAPEFGSEANEEAYGLEEEGEVTSVYVRNLSPNVTEYEIDQEFRSFGKIKPDGIFIRVRKEIGVCYAFVEFEDIIXCSMFKMLFRQVYIEERRPNSGGAAAARGGRRGRGRGSYQTDAPRGRFGGRGPGRGNTQDASEYTRLRGLLCLDRKEFYILGVSFVVKAVFRPELVCFASITLVTSP 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g01450 473 MobiDBLite consensus disorder prediction 249 270 - -
Aip06g01450 473 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 435 IPR039539 -
Aip06g01450 473 PANTHER GB|AAD20086.1 9 435 - -
Aip06g01450 473 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Aip06g01450 473 SUPERFAMILY RNA-binding domain, RBD 311 413 IPR035979 GO:0003676
Aip06g01450 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 364 IPR000504 GO:0003723
Aip06g01450 473 SUPERFAMILY NTF2-like 10 129 IPR032710 -
Aip06g01450 473 MobiDBLite consensus disorder prediction 211 304 - -
Aip06g01450 473 SMART rrm1_1 315 388 IPR000504 GO:0003723
Aip06g01450 473 CDD RRM_SF 316 365 - -
Aip06g01450 473 Gene3D - 284 426 IPR012677 -
Aip06g01450 473 MobiDBLite consensus disorder prediction 278 296 - -
Aip06g01450 473 Gene3D - 6 133 - -
Aip06g01450 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 364 IPR000504 GO:0003723
Aip06g01450 473 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Aip06g01450 473 MobiDBLite consensus disorder prediction 389 426 - -
Aip06g01450 473 CDD NTF2 10 130 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g01450 Aip-Chr6 24013043 24017802 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g01450 - - gmx:100787900 606.29