Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00897 ATGACTTCTCTGAGCAGAGAATTGGTGTTTCTCATACTCCAATTTCTGGAGGAGGAAAAGTTCAAAGAGTCGGTGCACAAGCTTGAGAAAGAGTCGGGGTTTTTCTTCAACATGAAATACTTTGAGGAAAAAGTACAGGCTGGCGAATGGGAAGAAGTTGAGAAGTATTTGGCAGGGTTTACAAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAGAAATATCTTGAAGCCCTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGTGATTTAAAAGTGTTCTCCACCTTCAATGAGGAACTATACAAAGAAATTACGCAGCTGTTAACGCTTAATAATTTCAGTCTGAATTGGCAGCACCAGCTTTGCAAAAACCCCAGGCCAAACCCAGATATAAAGACACTATTCACTGATCACACATGTACTCCTCCTAATGGTCCTCTAGCACCTGCACCTGTCAATCTTCCAGTTGCTGCTGTTGCAAAGCCTGCTGCCTATACTTCACTTGGAGCACATGGTCCATTTCCGCCTGCTGCAGCAACTGCTAATGCAAATGCTTTGGCTGGTTGGATGGCTAATGCGTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTGACGGCATCAAGCATGCCACTCCCACAGAATCAAGTGTCTATCTTGAAGAGGCCGAGGACACCTCCAACAGCTCCTGGCATGGTTGATTATCAGAATGCTGCCGATCATGACCAGCTAATGAAAAGACTTCGGCCTGCTCCTTCTCTAGAGGAGGTAGTTTCCTATCCGACAGCCCGACAAGCTTCTTGGTCACTGGAAGATCTACCAAGAACAGTGGCTATGACTTTACATCAAGGCTCCTCTGTGACAAGCATGGACTTTCATCCTTCTCACCAAACCTTACTTCTTGTTGGATCTAACAATGGTGAAATTGCCCTCTGGGAACTTACTTTGCGAGATAGATTGGTTACAAAGCCATTCAAGATATGGGATATCTCAGCATGTTCATTACCATTTCAGGCTGCTGCGGTCAAAGATGCCCCTATTTCTGTCAGCCGTGTTACATGGAGCCCTGATGGAAGTTTTGTGGGTGTCGCATTTACTAAACATTTGATTCACTTGTATGCCTACACTGGTTCAAATGAGCTAACTCAGCGCATAGAGGTTGATGCCCACATTGGTGGTGTGAACGACTTGGCATTTGCTCATCCCAATAAGCAACTTTGCATTGTGACTTGTGGGGATGATAAGTTGATAAAGGTGTGGGATTTAACTGGGCGAAGACTATTTAACTTTGAGGGGCATGATGCACCTGTATATTCCATTTGTCCTCACCACAAGGAGAACATACAGTTCATATTTTCAACTGCCATCGATGGCAAAATAAAAGCCTGGCTATATGATAACATGGGTTCCAGGGTTGACTATGATGCCCCTGGTCACTGGTGTACTACAATGCTTTATAGTGCTGATGGGAGTAGACTGTTTTCTTGTGGGACAAGTAAAGATGGAGAGTCATACCTTGTTGAGTGGAATGAAAGCGAAGGAGCCATCAAGAGAACATACAATGGTTTCAGAAAGAAATCTGCTGGTGTTGTGCAGTTTGACACAACTCAAAATCGATTCTTAGCTGCTGGAGAAGAAGGTCAAATCAAGTTTTGGGACATGGACAATATTAATGTTATTACTAGCACTGATGCTGATGGTGGACTTCAGGGCCTTCCACGCCTGAGATTCAACAAGGAAGGAAATCTTCTTGCTGTTACTACTGCAGACAATGGATTCAAAATTCTTGCCAATGCTAGTGGTCTTAGATCTTTAAGAACGATTGAAACTCCAGCTTTTGAAGCATTGAGATCACCCATTGAATCTGCAGCAATCAAGGCATCCGGCTCTGCTGCTGTTAACGTTAGTCCTGTCAACTGTAAAGTGGAAAGGAGCTCCCCTGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCGCAGGTCGAAATGTTGAGAAACCAAGAATTGTGGAAGATGCAATTGATAGAACTAAACCATGGCAGCTGTCTGAAATTCTGGATCCAGTCCAGTGTCGGTTAGTAACCATGCCTGACAGCACAGATTCTTCCAGCAAGGTTGTTCGACTTCTATATACAAACTCTGGTGCTGGTCTCTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAATGGACACGCGGCGAACAGAATCCCACTGGGAAGGCAACTGCCAGTGTTGTTCCACAACATTGGCAACCCAACAGTGGTCTTCTTATGACCAACGATATCTCAGGTGTCAATCTTGAAGAAGCAGTTCCTTGCATTGCACTCTCAAAGAATGATTCATATGTTATGTCTGCCTGTGGTGGGAAGGTTTCATTATTCAACATGATGACGTTCAAGGTAATGACAACATTCATGCCACCACCTCCTGCCTCTACTTTTCTGGCTTTCCATCCTCAGGATAACAACATAATTGCCATCGGAATGGAGGATTCTACCATTCATATTTATAATGTCAGAGTTGATGAGGTGAAATCAAAATTGAAGGGACACCAGAAACGTATTACTGGTTTAGCCTTCTCAACAAATCTCAACATCCTTGTTTCATCAGCTGCTGATGCTCATCTTAGCGTGTGGAGCATTGATACATGGGAGAAAAGAAAATCGGTTCCAATACAGCTACCTGCTGGAAAGGCGCCCACTGGTGACACTAGAGTGCAGTTTCATTCTGACCAACTACGCTTATTGGTAGCCCATGAGACTCAATTGGCAATATATGACGCCTCTAAGATGGAACGCATTCGGCAGTGGGTTCCACAAGATGTTCTTCCTGCTCCTATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATTTACGCTACATTCTGTGATGGCAATACTGGAGTTTTTGATGCGGATAGCTTGAGACTACGATGTCGTATTGCACTATCAACATATGTGCAATCAGCAACTTTAAGTGGAAGCCAATCTCTGTATCCTGTTGTTGTCGCCGCGCATCCAATAGAGGCGAACCAATTCGCGGTTGGATTGACAGATGGGTCTGTGAAAGTAATAGAGCCCAGTGAATCAGAGGGTAAATGGGGAACTAGTCCACCCATTGATAATGGAATATTGAACGGTAGAGCAGCATCTTCTTCTACAACAAGCAACCACACACCCGAGCAGGCACAACGATAA 3237 0.4408 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLNNFSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPAPVNLPVAAVAKPAAYTSLGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASSMPLPQNQVSILKRPRTPPTAPGMVDYQNAADHDQLMKRLRPAPSLEEVVSYPTARQASWSLEDLPRTVAMTLHQGSSVTSMDFHPSHQTLLLVGSNNGEIALWELTLRDRLVTKPFKIWDISACSLPFQAAAVKDAPISVSRVTWSPDGSFVGVAFTKHLIHLYAYTGSNELTQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESYLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEEGQIKFWDMDNINVITSTDADGGLQGLPRLRFNKEGNLLAVTTADNGFKILANASGLRSLRTIETPAFEALRSPIESAAIKASGSAAVNVSPVNCKVERSSPVRPSPILNGVDPAGRNVEKPRIVEDAIDRTKPWQLSEILDPVQCRLVTMPDSTDSSSKVVRLLYTNSGAGLLALGSNGVQKLWKWTRGEQNPTGKATASVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSAADAHLSVWSIDTWEKRKSVPIQLPAGKAPTGDTRVQFHSDQLRLLVAHETQLAIYDASKMERIRQWVPQDVLPAPISYAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIALSTYVQSATLSGSQSLYPVVVAAHPIEANQFAVGLTDGSVKVIEPSESEGKWGTSPPIDNGILNGRAASSSTTSNHTPEQAQR 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00897 1078 ProSitePatterns Trp-Asp (WD) repeats signature. 418 432 IPR019775 -
Aip06g00897 1078 Gene3D - 709 1050 IPR015943 GO:0005515
Aip06g00897 1078 Pfam WD domain, G-beta repeat 859 892 IPR001680 GO:0005515
Aip06g00897 1078 Pfam WD domain, G-beta repeat 397 431 IPR001680 GO:0005515
Aip06g00897 1078 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 123 1078 IPR027728 GO:0006355
Aip06g00897 1078 SUPERFAMILY WD40 repeat-like 276 604 IPR036322 GO:0005515
Aip06g00897 1078 Gene3D - 277 335 IPR015943 GO:0005515
Aip06g00897 1078 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Aip06g00897 1078 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 432 IPR001680 GO:0005515
Aip06g00897 1078 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 860 895 - -
Aip06g00897 1078 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Aip06g00897 1078 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 572 IPR001680 GO:0005515
Aip06g00897 1078 MobiDBLite consensus disorder prediction 1059 1078 - -
Aip06g00897 1078 SMART WD40_4 346 384 IPR001680 GO:0005515
Aip06g00897 1078 SMART WD40_4 388 431 IPR001680 GO:0005515
Aip06g00897 1078 SMART WD40_4 523 563 IPR001680 GO:0005515
Aip06g00897 1078 SMART WD40_4 810 850 IPR001680 GO:0005515
Aip06g00897 1078 SMART WD40_4 998 1039 IPR001680 GO:0005515
Aip06g00897 1078 SMART WD40_4 284 323 IPR001680 GO:0005515
Aip06g00897 1078 SMART WD40_4 433 474 IPR001680 GO:0005515
Aip06g00897 1078 SMART WD40_4 477 520 IPR001680 GO:0005515
Aip06g00897 1078 SMART WD40_4 853 892 IPR001680 GO:0005515
Aip06g00897 1078 SMART WD40_4 948 984 IPR001680 GO:0005515
Aip06g00897 1078 SMART WD40_4 771 807 IPR001680 GO:0005515
Aip06g00897 1078 PANTHER PROTEIN, PUTATIVE-RELATED 1 124 - -
Aip06g00897 1078 SMART ctlh 34 92 IPR006595 -
Aip06g00897 1078 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 460 1043 IPR011047 -
Aip06g00897 1078 PANTHER PROTEIN, PUTATIVE-RELATED 123 1078 - -
Aip06g00897 1078 ProSiteProfiles Trp-Asp (WD) repeats profile. 860 901 IPR001680 GO:0005515
Aip06g00897 1078 MobiDBLite consensus disorder prediction 1041 1078 - -
Aip06g00897 1078 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 332 IPR001680 GO:0005515
Aip06g00897 1078 SMART Lish 4 36 IPR006594 GO:0005515
Aip06g00897 1078 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 124 IPR027728 GO:0006355
Aip06g00897 1078 Gene3D - 357 620 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00897 Aip-Chr6 12420132 12427395 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00897 - - gmx:100793575 1893.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00897 06 12420132 12427395 Aip06g00897 06 12420132 12427395 ECH