Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00878 ATGCATTGTTATGAGTCTGAAGAGCTGGATTCTGTTGCAAGTGATGATGAAGACAGTCAGCAGGCAGCATTTCCTCAAGCGAATCCAGATGCTCCAGTAAGGAAAATAAGGTTGGAGCTTGGCATGGAGTTTGAAAATCTGGACCATTTCAAGAAGGCAGTTAAGAAGTTCAACATCAACATAGGGCGAAACATATTCTTTCCAATAGTGGATTCAACTAGGTGCAAGACCATATGTTATGACGAGAGTTGTCCGTGGCAGATATACTGTGCAAAACGGTCGTATCCATTAAGCTTTCAGGTGAAGACGTTTGTGAATGAACATACCTACAGCAAAGTTAATAAGAATAAATCAGCAGATGGTAAATGGGTTGTAGAGGAGCTTGAGGACAAGATCCGTGATCATCCAGAGATGACTCAAAGGCAGGCACAAGATTTTTTCAAGAAGGAGTATGACGTGATTGTGAACGAGAGGAAGATATACAGGGCTATGGTGAAGGCGAAAGAACTAATAGAAGGGTCAGAAATAGCTCAGTATGCAGTTCTTAGGGACTATGCTAATGAAATTATGAGGACCAACCCTGGCTCCACTGTGAGGATTAGTACTGATTATGTTGAAGGGACTGGGCATAAATTCAAAAGGATATATATATGCTTGGAAGGGTGTAAAAATGATTTTTCGGTTGGTTGCAGGCCTTTTATAGGGTTAGATGAAACTTTTCTAAAGGGATACTACCCTGGCCAGTTGTTGACCGCAATCGGCCACGATGCCAATAACCACATATACCTTATATCGTATGCTGTTGTGGAGTGCGAATGCAAGGATAGCTGGAAAGTGGTTTCTCGAACTCCTCCAAGAAGACTTAGGATCCCTCCAAGTCAATGGAGTAGGAGTGGGTTTAGCGAATACCCAAAGCCTGACCATTACACGAACAACAACTGCGAATCATTCAACTCTAGGATCAAGAAAATGAGAGGGAAGCCTATAATAACTATGCTGGAAGAGGTGAGGTGTTATATGATGAACATCATTGCAAGAAACAAGAAGGCGTTGGTGGAATATACTGGAGTAATCACTCCTGTGCAGCAGAGTAGGCTGGAAAAGGAGAAAAGGGAGAGCAACAAGTGGCGGCCGTTTCCCACTGGAGATGACCCTGGAAATGTGTATGAAGTACAATGCCTCCCACATAAGCATTGTGATCTGCCTCCTATATTACCCCCAGTATACAAGAAGCAGATTGGGAGACCAAAGTTGAAAAGAGACAAGAAGAATGATGCCCCAAAAGAACCCACCCCAGATCCTCATAGGGCCCCCAGAAAGTATGGCCCCATCACATGCAGGTACTGCCTAAAGACTGGACACAACAGTCGTAGTTGTTCCAAGAAGAAGGAGGCAATGGCTGGGAGTGCTGGGGGACAAAGTTCAAGTCAACACCCAACTGCTGAGGATGATGAAGAGGAGGCGGCAAGACTAGAGGAGATGTTCTGGGAGGAAACTCTGGAAGCTGTTGAAGCAGCAGTATCTCAGCCACCACCTGAGACCACCCCAGTTTCTCAACCCGTTCCTAATACAGTCAGGTCTTCTTCAACTAGGTCACCAACTGCAAAAAAACCACCAAAGAAGAAGAAGAATCTGCGAAGACCACCACCAACTACTCAGCAACCACAATCTGCTCCAGCTATTGTCAGGCCAACAACACCAACTACTACTAGTCCATCACCCCCGGCCTCTGATGTGCCCCCCCACTGTGACACCTCAAACCATGCAAGCTGCCTCCCAGGGCACTACTTCCAGATTCATGGAATTCATGCCAACTCCCGCAGTGAGAGGATCAAGCTCAAAACCACATTCAACTCACACAGAACAGGGTGTGCAACGAGTTACCTTCCAATTGGGACAACGGACGAACCACCTCCCAGGATTCATCACAGCGTCACCCCCAACCCACAGAAACATTTGCCATTGAACTTCCTATCATGCACCCGCTTTGAAATTGAGCTTCCAGACACACTCCCACTGCCATTCGAAGGTGGAGTACAGAGTCTTTGCCTCGACATTGGACACATTATAACGGTCACACAGCTCAGCAATCTACGTGTGAAGCCCCCCAAACCATGTCACACCGTGAAGTGCCACGTAGGTAGCGTTACTAACGGAGTCAACGCCGGAAtaaggcttgGATCGAGTACATTGGTTGTTGAAGTTCAAAGGAAGGAGAATAGAATAAGAATAGCGTTGAGCATGTCCATTTTTCTACGAAGATCACTGAGGACTCGTTTATTGAGCTCCAACAATTTTAACTTGTTTCTCCCTAACTCCTTTGATTCTTCCCAAACCATTAACCATCGCCGCCACTTCTCAGATAACCTCTTTCAAACCGTTTGCTTTCGCTCAACTTCCCTTTCAACTGAAAATCACTGCTACGGTTATGGTTATTCGCATCGCCAACACCACCAGTCCACATGCCGTCGGTTCTTCGCTTCTGAAGCCGCCGCCACCGCCGCCCAACGCTCAACCTCCGATGGCCTCACGGTGGAGGGAATTCTCGCGAACAATTGGAACATTCTAGACGATAACGAAAGCGATTGGAAGAGCCATGCCTCTGCGGTTGCGCAATCTATTCATCTCATCAAACGCCGCTTACAGTGGAAGAAATTGAAGGTAAGGTTGGATATGTTATCTGTGCAGCTGAATAAGGCAGATCTTTGGGATGACCCTGTGCACGCTGGTAACATTAGCAGAGAGCATGGAACCCTAATGGGAAAGGTGAAAGAGGTGAATGCGCTTGAGCAAGAGTTACTCGAGCATATTGACATGATTAAGCTTGCTCGTGATGAGAATGACTCAGAATTGGAATCGGAATCATTGAAAGCTTTGCGTGACATGAGAAAAAATGCAAAGGAAAAAGAGCTAGAGGCACTGCTAGCTGGGGAGCAGGATTCTTGTTCTTGCTTCATCGAGGTTCAGGCTGGGGCCGGGGGTACTGAGAGCATGGACTGGGCTGCAATGGTTATGCAGATGTATAAATCATGGGCCCACCGACGTGGATATAATGTAACTGTAATAGATGAAATGCCTGGTGAGATTGCAGGAATCAAGCGAGCTACAATTAAAGTAGATGGTGAGTTTGCATTTGGATATGCAAAAGCAGAAGTAGGAGTCCACAGACTTGTGAGAATATCACCTTTTGACAGTAATAAGCGCCGGCATACTTCATTTGCTGCAGTAGCTGTGATTCCAATCCTTGGTGATGGATCTAGTCATGTACAAATTAATGAATCTGATCTTCGAATTGAACGGTTTCGTTCTGGCGGTCCCGGTGGCCAGCATGCTAATACAACTGAAAGTGCAATAAGAATAATTCATATTCCTACAGGAATTACTGCAACTTGTCAGAATGAAAGATCCCAACATCAGAATAAGGCTTCTGCGATGGCTGTGCTCAAGTCGAGATTAGACCAACTGGAGATGGCACGCCAGGCTCAGTTGAATTCACAACATACACAATCTCTCACGGACATAACTTGGGGCAGTCAGATACGCAGTTATGTGCTCCATCCTTATCGAATGGTGAAAGATCTTAGAACTAATTATGAGGTTTCAGACCCTGACTCTGTCCTTGAGGGAGATATAGACGGCTTCATCTTGAGCTATCTATCAGCTACTTTGGATAAAGAAGACAGTGATGCTTGA 3693 0.4571 MHCYESEELDSVASDDEDSQQAAFPQANPDAPVRKIRLELGMEFENLDHFKKAVKKFNINIGRNIFFPIVDSTRCKTICYDESCPWQIYCAKRSYPLSFQVKTFVNEHTYSKVNKNKSADGKWVVEELEDKIRDHPEMTQRQAQDFFKKEYDVIVNERKIYRAMVKAKELIEGSEIAQYAVLRDYANEIMRTNPGSTVRISTDYVEGTGHKFKRIYICLEGCKNDFSVGCRPFIGLDETFLKGYYPGQLLTAIGHDANNHIYLISYAVVECECKDSWKVVSRTPPRRLRIPPSQWSRSGFSEYPKPDHYTNNNCESFNSRIKKMRGKPIITMLEEVRCYMMNIIARNKKALVEYTGVITPVQQSRLEKEKRESNKWRPFPTGDDPGNVYEVQCLPHKHCDLPPILPPVYKKQIGRPKLKRDKKNDAPKEPTPDPHRAPRKYGPITCRYCLKTGHNSRSCSKKKEAMAGSAGGQSSSQHPTAEDDEEEAARLEEMFWEETLEAVEAAVSQPPPETTPVSQPVPNTVRSSSTRSPTAKKPPKKKKNLRRPPPTTQQPQSAPAIVRPTTPTTTSPSPPASDVPPHCDTSNHASCLPGHYFQIHGIHANSRSERIKLKTTFNSHRTGCATSYLPIGTTDEPPPRIHHSVTPNPQKHLPLNFLSCTRFEIELPDTLPLPFEGGVQSLCLDIGHIITVTQLSNLRVKPPKPCHTVKCHVGSVTNGVNAGIRLGSSTLVVEVQRKENRIRIALSMSIFLRRSLRTRLLSSNNFNLFLPNSFDSSQTINHRRHFSDNLFQTVCFRSTSLSTENHCYGYGYSHRQHHQSTCRRFFASEAAATAAQRSTSDGLTVEGILANNWNILDDNESDWKSHASAVAQSIHLIKRRLQWKKLKVRLDMLSVQLNKADLWDDPVHAGNISREHGTLMGKVKEVNALEQELLEHIDMIKLARDENDSELESESLKALRDMRKNAKEKELEALLAGEQDSCSCFIEVQAGAGGTESMDWAAMVMQMYKSWAHRRGYNVTVIDEMPGEIAGIKRATIKVDGEFAFGYAKAEVGVHRLVRISPFDSNKRRHTSFAAVAVIPILGDGSSHVQINESDLRIERFRSGGPGGQHANTTESAIRIIHIPTGITATCQNERSQHQNKASAMAVLKSRLDQLEMARQAQLNSQHTQSLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDIDGFILSYLSATLDKEDSDA 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00878 1230 MobiDBLite consensus disorder prediction 504 585 - -
Aip06g00878 1230 Coils Coil 926 946 - -
Aip06g00878 1230 MobiDBLite consensus disorder prediction 548 567 - -
Aip06g00878 1230 SMART PCRF_a_2 941 1051 IPR005139 GO:0006415
Aip06g00878 1230 Pfam RF-1 domain 1088 1195 IPR000352 GO:0003747|GO:0006415
Aip06g00878 1230 Gene3D Release factor 861 972 - -
Aip06g00878 1230 Gene3D - 986 1215 - -
Aip06g00878 1230 MobiDBLite consensus disorder prediction 519 534 - -
Aip06g00878 1230 Pfam MuDR family transposase 36 100 IPR004332 -
Aip06g00878 1230 SUPERFAMILY Release factor 887 1223 IPR045853 -
Aip06g00878 1230 Hamap Peptide chain release factor 2 [prfB]. 859 1223 IPR004374 GO:0005737|GO:0006415|GO:0016149
Aip06g00878 1230 PANTHER PEPTIDE CHAIN RELEASE FACTOR PRFB1, CHLOROPLASTIC-RELATED 816 1228 - -
Aip06g00878 1230 MobiDBLite consensus disorder prediction 405 441 - -
Aip06g00878 1230 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 816 1228 - -
Aip06g00878 1230 MobiDBLite consensus disorder prediction 1 27 - -
Aip06g00878 1230 TIGRFAM prfB: peptide chain release factor 2 862 1221 IPR004374 GO:0005737|GO:0006415|GO:0016149
Aip06g00878 1230 MobiDBLite consensus disorder prediction 418 436 - -
Aip06g00878 1230 Pfam PCRF domain 888 1076 IPR005139 GO:0006415
Aip06g00878 1230 Gene3D - 1082 1178 - -
Aip06g00878 1230 MobiDBLite consensus disorder prediction 454 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00878 Aip-Chr6 12143069 12150582 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00878 K02836 - gmx:100797427 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00878 06 12143069 12150582 Aip06g00878 06 12143069 12150582 ECH