Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00847 ATGGGGACTGAAAATCCCGGTCGTCCGGGCTTCCCTGCAAGACCTGCTTCTTTGCCTTTTGCCGCCGCGCCGCAGACTGCCACACCGTTTTCATCAACCGGGCCTGTGGCTGGATCAGAGCCTCCTTCTTTCAGACCTACTGCTATGCCTCCTCCTCCTCAGGCATCCTCGCTGTTTTCATCTTCAGGACCTCCAGTTAGACCAGGCGTGCCTGGTTTTAGACCTGCACCGCCAGGCACGTTCAATGACCCATCAGTGCCTCCTCCTCAGCCTCCATCGGCCAATGCCCCGCCTGCTGCTGGGACTTTCCAGCGCTTTCCACCCCCACCGTTCTCCTCATCAGGTGCAGTGCCTCCGCAGCAGCGTGCTCCATTTGTGGGGCCACCGCCCATCCAGCAATCTGGAAGTCAACCACCATCTTTTCCATCACCTCCACAGCCTCAGACCCCTTTTGTTCAAATGGGGTCACCCCCACAGAGTATCAGTCCTGCACCTATGGGCTCAAATGTGCCTCCCCCTACACCTACATATCAGCCGCCTTTTCCTGGATATGCCCGCATGCAGCAACCTCCTCCTGCACATTCCTCTTTCCCCCCGAATCAAGGAAATTATGGACCTCCCCCACCACCAGTGTCTTCTCCCTTTTTGCCTCAGCCAGGAGGTTATGCTCCATCGCCTGCAGTGGCTGCTCCTCTAGGCATGCAGCCGCCAGGATCTGGTCCCCCTATTGGTGGCATTCAGGGCTTGGCAGAAGACTTCAATTCCCTTACAGTGCAAACTCGTCCTGGAACAATGGATCCATTGTTTGATTCCAATGAACTTCCCAGGCCGTTGGATGGCGATGTGGAGCCGAAGAATTTGGATGCCATGTATCCTATGAACTGCCATCCCAGATATCTAAGACTCACAACAAGTGCAGTTCCTAGCTCCCAATCCTTAGCTTCAAGGTGGCATCTGCCTCTTGGAGCAGTTGTATGTCCACTCGCAGAACCTCCGGAAGGGGAGGAGTTGTCTGTAGTTAGTTTTGCTCCTGCTAGTGTTGTACGCTGTAGAAGATGTCGCACATATGTTAATCCATATATGACATTTACAGAAGCTGGAAGAAAATTCCGCTGCAATGTCTGCACGTTGCTTAATGATGTTCCTAGTGAATATTACGCACAATTAGATGCCACTGGCAAAAGAGTTGATTTGGATCAACGACCTGAGCTTACAAAGGGTACTGTAGAATTTGTTGCTCCTGCTGAGTATATGGTGCGGCCTCCTATGCCCCCAGTTTATTTCTTCCTCATCGATGTTTCGATATCTGCTGTTAGAAGTGGCATGATTCAGATTGTTGCTGAAACAATCAAGTCATGCTTAGATGAGCTGCCTGGCTTTCCACGAACACAGATAGGGTTTGCAACTTTTGACAGCACTATACATTTTTATAATATGAAGTCATCCCTGACTCAGCCACAGATGTTAGTAGTCTCAGATCTGGACGATGTATTTGTTCCACTGCCAGATGATCTTCTAGTTAACTTGTCTGAATCAAGAAGTGTGGTTGAAACCTTCCTAGATAGTTTACCATCCATGTTCCAGGACAATGCTAATGTGGAATCAGCTTTTGGTCCTGCTCTCAAGGCTGTATTTATGGTTATGAGTCAACTTGGAGGGAAATTGCTTATTTTTCAAAACACACTTCCATCTCTTGGTGTTGGCCGTTTGAAATTACGTGGAGATGATTCTCGTGTTTATGGGACAGACAAAGAACATGTGTTGAGATTGCCTGAAGATCCATTTTATAAGCAAATGGCTGCTGAGTTTTCTAAATTCCAAATATCAACAAACGTGTATGCATTCAGTGATAAGTACACTGACATAGCCTCCTTGGGAACTTTGGCGAAGTATACTGCTGGTCAAGTGTATTACTATCCTGCTTTCCAATCAGCAATTCATGGGGAGAAATTGAGACATGAGTTAAGAAGAGACCTTACTAGAGAAACCGCATGGGAAGCTGTAATGCGTATTAGATGTGCAAAAGGTGTTCGCTTCACAACTTATCATGGAAACTTTATGCTAAGGTCCACTGATTTGTTAGCACTCCCAGCTGTAGACTGTGATAAAGCCTTCGCCATGCAGTTATCTCTTGAGGAGACATTATTGACAACTCAGACAATGTATTTCCAAGTTGCATTGCTATATACAGCATCTTGTGGAGAAAGGCGTATCAGAGTACACACAATGGCAGTTCCAGTTGTTACAGACTTGGGAGAGATGTATCGTTTGGCTGATACCGGTGCTATTGTATCCCTGTTTAGTAGGCTTGCTATCGAGAAAACATTATCCCAAAAACTAGAAGATGCACGAACTGCTGTGCAACTAAAAATTGTGAAAGCCCTGAAGGAATATCGAAACCTTTATGCCGTGCAACATCGCTTGGCCAACAGAATGATATATCCTGAGTCTTTAAAGTTCTTAATGTTGTATGGATTAGCTCTCTGTAGATCAATGGCTCTTCGCGGAGGGTTTGGTGATGCTCCCCTGGATGAAAGATGTGCTGCAGGGCACACAATGATGGTTCTACCAATAAAAAGACTGTTGAAACTTCTCTATCCTAGTTTGATTCGACTTGATGAATATCTCCTGAAAGTGGACCTGAAAAGTATTGAGAGAAGGTTAGCCTTGACCATGGAGAACTTGGATTCTAGGGGCCTTTATATATATGATGATGGCTTCCGGTTCATTTTATGGTTTGGCAAGGGGGTTTCCCCTGAGATAGCTAGAAATTTACTTGGGGCAGACTTTGCAGCAGAATTATCAAAGGCTACACTCAGTGAGCATGATAATGAAATGTCAAGGGGGCTGATGAGGGTACTTGAGAAATTCAGAAACGCAGATCGTGCATACTACCAGCTGTGCTACCTTGTGAGGCAAGGTGAACAGCCCAGAGAAGGATTCCTTCTTCTTACAAACCTTGTTGAGGACCAGATGGGCGGTAATAATGGTTATTCGGATTGGATGCTACAGATATCACGACAAGTTCAGCAATGA 3036 0.4648 MGTENPGRPGFPARPASLPFAAAPQTATPFSSTGPVAGSEPPSFRPTAMPPPPQASSLFSSSGPPVRPGVPGFRPAPPGTFNDPSVPPPQPPSANAPPAAGTFQRFPPPPFSSSGAVPPQQRAPFVGPPPIQQSGSQPPSFPSPPQPQTPFVQMGSPPQSISPAPMGSNVPPPTPTYQPPFPGYARMQQPPPAHSSFPPNQGNYGPPPPPVSSPFLPQPGGYAPSPAVAAPLGMQPPGSGPPIGGIQGLAEDFNSLTVQTRPGTMDPLFDSNELPRPLDGDVEPKNLDAMYPMNCHPRYLRLTTSAVPSSQSLASRWHLPLGAVVCPLAEPPEGEELSVVSFAPASVVRCRRCRTYVNPYMTFTEAGRKFRCNVCTLLNDVPSEYYAQLDATGKRVDLDQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIQIVAETIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDVFVPLPDDLLVNLSESRSVVETFLDSLPSMFQDNANVESAFGPALKAVFMVMSQLGGKLLIFQNTLPSLGVGRLKLRGDDSRVYGTDKEHVLRLPEDPFYKQMAAEFSKFQISTNVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSAIHGEKLRHELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYFQVALLYTASCGERRIRVHTMAVPVVTDLGEMYRLADTGAIVSLFSRLAIEKTLSQKLEDARTAVQLKIVKALKEYRNLYAVQHRLANRMIYPESLKFLMLYGLALCRSMALRGGFGDAPLDERCAAGHTMMVLPIKRLLKLLYPSLIRLDEYLLKVDLKSIERRLALTMENLDSRGLYIYDDGFRFILWFGKGVSPEIARNLLGADFAAELSKATLSEHDNEMSRGLMRVLEKFRNADRAYYQLCYLVRQGEQPREGFLLLTNLVEDQMGGNNGYSDWMLQISRQVQQ 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00847 1011 SUPERFAMILY Zn-finger domain of Sec23/24 343 421 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Aip06g00847 1011 Gene3D - 295 747 - -
Aip06g00847 1011 Pfam Sec23/Sec24 trunk domain 422 658 IPR006896 GO:0006886|GO:0006888|GO:0030127
Aip06g00847 1011 MobiDBLite consensus disorder prediction 68 96 - -
Aip06g00847 1011 MobiDBLite consensus disorder prediction 122 152 - -
Aip06g00847 1011 Pfam Sec23/Sec24 zinc finger 348 385 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Aip06g00847 1011 SUPERFAMILY Helical domain of Sec23/24 759 866 IPR036175 GO:0006886|GO:0006888|GO:0030127
Aip06g00847 1011 SUPERFAMILY beta-sandwich domain of Sec23/24 171 757 - -
Aip06g00847 1011 MobiDBLite consensus disorder prediction 24 38 - -
Aip06g00847 1011 CDD Sec24-like 422 663 IPR041742 GO:0006886|GO:0006888|GO:0030127
Aip06g00847 1011 Gene3D Sec23/Sec24 helical domain 748 1009 - -
Aip06g00847 1011 PANTHER OS04G0129500 PROTEIN 28 1011 - -
Aip06g00847 1011 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 880 1011 IPR036180 -
Aip06g00847 1011 Gene3D - 293 406 - -
Aip06g00847 1011 Pfam Sec23/Sec24 helical domain 759 862 IPR006900 GO:0006886|GO:0006888|GO:0030127
Aip06g00847 1011 Gene3D von Willebrand factor, type A domain 424 661 IPR036465 -
Aip06g00847 1011 MobiDBLite consensus disorder prediction 164 221 - -
Aip06g00847 1011 Pfam Gelsolin repeat 890 940 IPR007123 -
Aip06g00847 1011 Gene3D Severin 867 990 IPR029006 -
Aip06g00847 1011 SUPERFAMILY vWA-like 422 661 IPR036465 -
Aip06g00847 1011 MobiDBLite consensus disorder prediction 1 236 - -
Aip06g00847 1011 PANTHER SEC24-RELATED PROTEIN 28 1011 - -
Aip06g00847 1011 Pfam Sec23/Sec24 beta-sandwich domain 664 748 IPR012990 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00847 Aip-Chr6 11487333 11495748 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00847 K14007 - gmx:100810009 1587.78