Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00827 ATGAAACTTGGGTTTCTACTAAGACAGTATGTTATTAGCAGAAGAAGCAAATTTGCAGTGCAATTCCATGAATATCATCACTCACCGGATCAGCTCAATTCCGTCATCAACAATGCTTCCCAATTCAAGAACCTCAAACACGCCACGCAAATCCACACCCAAATCATCACAGCCAACTACGCCTCCCACCCTATACTCTTCAACAACCTCCTCCTCCTGTACGCCAAATGCGGTTCCATCCATCACTCCCTCCTCTTCTTTACCTCAACCCCACGCGCCTCCATCAACGTCGTCACTTTCACCACCCTCATCACCTACCTCTCGCGCTTCAACAACCCATTCCTTGCCATCTCCTACTTCAACCGCATGAGATGCACCGGCATTTATCCCAACAATTACACATTCTCTGCCGTCTTGCCCGCTTGCGCCCACACAAACCTTGTTACCCACGGTCAACAACTGCATGCTTTGGTTTATAAACATGGATTTGACACTGATACCTTTGTGGCTAGTGCCTTGCTTGACATGTACGCTAAGTGTGGCTCTATGTCTTTGGCACAGAAGGTGTTCGATGAAATGCCCCATAGAAACCTTGTCTCTTGGAACTCTTTGATTGTTGGGTTTTTGAAAAATAACTTGTATAATCGTGCTATTGGGATTTTTAGGGAGGTTGTCCGCCAGGCCTCGCTTCCTCCTGATCAGGTTAGCTTTTCGGGTGTGTTCGCTGCTTGTGCTGCTGTGGTTGACATGGATTTCGGCAAGCAGCTGCATGGGAATGGTTTGAAGCGTGGTTTACTTGTGTTGGTTTATGTGAAGAACTCGTTGATGGACATGTACAATAAATGCAGGTTGTTTGATGATGCGGCCAAGTTGTTCCATGCTGATGGAGAGAGAGATGTTGTTACCTGGAACGTAATGATCATGGGATGTGTACACAGTGAACACTTTGAGGAAGCTTGCAGCTATTTCAGGGCCATGAAGAGGGAAGGCATCTTGCCAGATGAAGCTTCGTATTCCTCTGTTCTTCATGCTTGTGCCAGCATTGCTGCTTTAACTCAAGGAACCTTGATCCACAACCAGATATTAAAGCTTGGGCATGTAAAAAATGCATGTGTATCGAGCTCACTGGTAATGATGTATGGCAAATGTGGGAACTTGTTTGATGCTTATCGGGTATTTGAAGAAACTGAGCATCGCAATGTGGTTTGTTGGACAGCTATGATAGCGGTTTGCCACCAACATGGCTGCGCAAATGAAGCAATTGGGTTATTTGAGGACATGCTCAAAGAGGGAATTGTGCCGGAGCACATCACTTTTGTTTCTGTGCTGTCAGCTTGCAGCCATACTGGACAGGTTGAAGATGGATTTAGGTACTTCAATTCCATGACTAACGTCCATAATATAGAACCTGGGCTTGAACATTATGCTTGCATGGTTGATCTGCTTGGTCGTGTTGGGAGGTTGGATGAAGCATGGAAGTTCATTGAATCAATGCCAATCAAGCCTGACTCATCAACTTGGGGGGCTTTGCTTGGAGCATGCGGAAAGTACGGCAATCTTGAAATGGGCAGGGAGGTTGCGGACAAGCTATTCGAGTTGGAACCAGATAATCCAGGAAACTATGTGCTTCTTTCTAATATCTATTTACGACATGGGATGTTGGAAAAAGCTAATGAGGTCAGGCAATTGATGGGGATCAAGGGGGTAAGGAAAGAGATTGGATGTAGCTGGATTGATGTTAAGAACAAGACCTTTACATTCACTGTGAATGATAGGTCACATTCAAGGACCGATGAGATCTATGAAATGTTACAGAAGCTAAAGGAATTGGTAAAGAAGAGAGGATATGCTGCTGAGACACAGTTTGCAACCAACAGTGCAGAAGGGTCTGAAGAGCAGAGTTTGTGGTATCACAGTGAGAAATTAGCTCTTGCATTTGGTCTTCTGGTCCTCCCAGCTGGATCTCCTGTAAGGATAAAGAAGAATTTGAGGACTTGTGGTGATTGTCATACTGTTATGAAGTTTGCTTCGGAGATTTTTCAGAGAGAGATTATCGTAAGAGATATCAATAGGTTTCATCGATTCACTAATGGCTTGTGCTCGTGTAGAGATTATTGGTGA 2121 0.4474 MKLGFLLRQYVISRRSKFAVQFHEYHHSPDQLNSVINNASQFKNLKHATQIHTQIITANYASHPILFNNLLLLYAKCGSIHHSLLFFTSTPRASINVVTFTTLITYLSRFNNPFLAISYFNRMRCTGIYPNNYTFSAVLPACAHTNLVTHGQQLHALVYKHGFDTDTFVASALLDMYAKCGSMSLAQKVFDEMPHRNLVSWNSLIVGFLKNNLYNRAIGIFREVVRQASLPPDQVSFSGVFAACAAVVDMDFGKQLHGNGLKRGLLVLVYVKNSLMDMYNKCRLFDDAAKLFHADGERDVVTWNVMIMGCVHSEHFEEACSYFRAMKREGILPDEASYSSVLHACASIAALTQGTLIHNQILKLGHVKNACVSSSLVMMYGKCGNLFDAYRVFEETEHRNVVCWTAMIAVCHQHGCANEAIGLFEDMLKEGIVPEHITFVSVLSACSHTGQVEDGFRYFNSMTNVHNIEPGLEHYACMVDLLGRVGRLDEAWKFIESMPIKPDSSTWGALLGACGKYGNLEMGREVADKLFELEPDNPGNYVLLSNIYLRHGMLEKANEVRQLMGIKGVRKEIGCSWIDVKNKTFTFTVNDRSHSRTDEIYEMLQKLKELVKKRGYAAETQFATNSAEGSEEQSLWYHSEKLALAFGLLVLPAGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGLCSCRDYW 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00827 706 Pfam PPR repeat 475 498 IPR002885 -
Aip06g00827 706 Pfam PPR repeat 273 293 IPR002885 -
Aip06g00827 706 Pfam PPR repeat family 399 447 IPR002885 -
Aip06g00827 706 Pfam PPR repeat family 197 245 IPR002885 -
Aip06g00827 706 Pfam PPR repeat family 96 143 IPR002885 -
Aip06g00827 706 Pfam PPR repeat family 298 346 IPR002885 -
Aip06g00827 706 Pfam DYW family of nucleic acid deaminases 615 706 IPR032867 GO:0008270
Aip06g00827 706 Gene3D Tetratricopeptide repeat domain 371 646 IPR011990 GO:0005515
Aip06g00827 706 Pfam E motif 517 579 IPR046848 -
Aip06g00827 706 PANTHER OS07G0578800 PROTEIN-RELATED 24 699 IPR045215 GO:0003723|GO:0009451
Aip06g00827 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Aip06g00827 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Aip06g00827 706 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 24 699 - -
Aip06g00827 706 Gene3D Tetratricopeptide repeat domain 13 151 IPR011990 GO:0005515
Aip06g00827 706 Gene3D Tetratricopeptide repeat domain 152 256 IPR011990 GO:0005515
Aip06g00827 706 Gene3D Tetratricopeptide repeat domain 259 355 IPR011990 GO:0005515
Aip06g00827 706 TIGRFAM PPR: pentatricopeptide repeat domain 402 434 IPR002885 -
Aip06g00827 706 TIGRFAM PPR: pentatricopeptide repeat domain 301 335 IPR002885 -
Aip06g00827 706 TIGRFAM PPR: pentatricopeptide repeat domain 98 131 IPR002885 -
Aip06g00827 706 TIGRFAM PPR: pentatricopeptide repeat domain 437 463 IPR002885 -
Aip06g00827 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Aip06g00827 706 SUPERFAMILY TPR-like 376 560 IPR011990 GO:0005515
Aip06g00827 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00827 Aip-Chr6 11183641 11186574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00827 93 706 Glycoside Hydrolase AT3G49170 40.128 1.61e-162 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00827 - - ccaj:109797249 1068.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00827 06 11183641 11186574 Aip06g00827 06 11183641 11186574 ECH