Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00812 ATGGGTTCTACCCTTGCGATTTTATTCTTAACTTTCTGCACTTGCTATCTACAGATCGCTGGGGCTGAACCACAACGCCTTTCTACTCTCAAGCTTAACTCCCGCATTCTCCAGGAGTCTATTGCTAAACAGATCAACGAAAATCCAGAGGCAGGATGGGAGGCTGCTATAAATCCTCGTTTCTCCAATTATACAGTTGGAGAATTTAAGCGCCTGCTTGGTGTTAAACCAACTCCTAAGAAGGAACTGATAGGTGCACCCATTGTGACTCATCCAAAATCATTGAAATTGCCAAAGGAGTTTGATGCAAGGACTCAATGGTCTCAATGTAGTACCATTGGAAGAATTCTAGATCAGGGTCATTGTGGTTCTTGTTGGGCATTTGGTGCTGTAGAGTCATTATCAGATCGGTTTTGCATTCATTTTGATGTGAATATCTCTCTCTCTGTGAACGATCTTCTCGCATGCTGTGGCTTTTTGTGTGGATCTGGTTGTGATGGAGGGTATCCCCTAAATGCATGGCGATACCTAGTCAGCCATGGTGTTGTCACTGAAGAGTGTGACCCATACTTTGATCAAATTGGCTGTTCCCATCCTGGTTGTGAGCCCGCATACAGTACCCCTAAGTGTGTAAAAAAGTGTGTGAGCGGGAATCTGCTTTGGAAGAAATCAAAGCACTATAGTGTCAATGCATATAAGATCAAGTCTAATCCCCATGATATCATGGCAGAAATTTATAAGAATGGGCCAGTTGAAGTTGCATTCACTGTTTACGAGGATTTTGCTCTCTACAAATCAGGAGTTTACAAACACATCACAGGTGTGGAACTCGGTGGTCATGCTGTGAAGCTGATAGGATGGGGAACATCTGATGATGGAGAGGACTATTGGCTTCTCGCAAATCAGTGGAATAGAAGTTGGGGAGATGATGGTTACTTTAAGATCAGAAGGGGGACAAATGAATGTGGAATTGAAGAAGACGTTACAGCTGGTATGCCTTCCACCAAAAATCTCGTACTCGAAGTCACTGACACGGGTGCCGATGCTGTTGATGGTGCTTCATTCTGA 1068 0.4382 MGSTLAILFLTFCTCYLQIAGAEPQRLSTLKLNSRILQESIAKQINENPEAGWEAAINPRFSNYTVGEFKRLLGVKPTPKKELIGAPIVTHPKSLKLPKEFDARTQWSQCSTIGRILDQGHCGSCWAFGAVESLSDRFCIHFDVNISLSVNDLLACCGFLCGSGCDGGYPLNAWRYLVSHGVVTEECDPYFDQIGCSHPGCEPAYSTPKCVKKCVSGNLLWKKSKHYSVNAYKIKSNPHDIMAEIYKNGPVEVAFTVYEDFALYKSGVYKHITGVELGGHAVKLIGWGTSDDGEDYWLLANQWNRSWGDDGYFKIRRGTNECGIEEDVTAGMPSTKNLVLEVTDTGADAVDGASF 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00812 355 PANTHER CATHEPSIN B-LIKE PROTEASE 3 17 339 - -
Aip06g00812 355 PRINTS Papain cysteine protease (C1) family signature 119 134 IPR000668 GO:0006508|GO:0008234
Aip06g00812 355 PRINTS Papain cysteine protease (C1) family signature 280 290 IPR000668 GO:0006508|GO:0008234
Aip06g00812 355 PRINTS Papain cysteine protease (C1) family signature 296 302 IPR000668 GO:0006508|GO:0008234
Aip06g00812 355 Pfam Papain family cysteine protease 97 331 IPR000668 GO:0006508|GO:0008234
Aip06g00812 355 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 278 288 IPR025660 -
Aip06g00812 355 Gene3D Cysteine proteinases 28 339 - -
Aip06g00812 355 CDD Peptidase_C1A_CathepsinB 98 331 - -
Aip06g00812 355 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 119 130 IPR000169 -
Aip06g00812 355 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 17 339 - -
Aip06g00812 355 SMART pept_c1 97 332 IPR000668 GO:0006508|GO:0008234
Aip06g00812 355 SUPERFAMILY Cysteine proteinases 40 333 IPR038765 -
Aip06g00812 355 Pfam Peptidase family C1 propeptide 37 79 IPR012599 GO:0004197|GO:0050790
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00812 Aip-Chr6 10983667 10988361 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00812 K01363 - gmx:100778103 644.81