Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00784 ATGAGGAGAACTTCTACACTTGTGGGTGTGCTTCTGGTACTTACATTAATCAGCTGTGGCCCATGGAGAGTGTGGAGCAGCTCACTTTGCAAGCAGACAAATTTGGAGGTTAGACCTCACAGCGTTAGTATTACAGAATTTGGCGCGGTTGGAGATGGGGTCACTCTCAACACAAAAGCATTTCAGAATGCAATATTTTACCTTAATTCATTTGCAGACAAAGGCGGAGCGAAGCTCTTTGTCCCGGCTGGCCGCTGGTTGACCGGTAGTTTTGATCTCATCAGCCATCTAACTCTCTGGTTGGACAAAGATGCTGTAATTCTTGGATCCACAAACCCCGATGATTGGCCAGTTGTTGATCCTCTACCGTCATATGGGCGAGGAAGGGAGTTGCCGGGTGGAAGGCACAAGAGCCTCATTTATGGACAAGATTTGACTGATGTTGTTATAACAGGTAACAATGGAACAATTGATGGTCAAGGGAGTATATGGTGGAGCCTGTTTAGGAACAAAACCTTGGATTATACGCGTCCCCATTTGGTAGAATTGATGAACTCGGCGGGGGTTCTCATCTCGAATTTAACCTTCTTAGATTCTCCATTTTGGAATATCCACCCTGTATATTGCAGCCAAGTTACAGTTAAGAAAGTCAAGATCCTTGCTCCTCTTGATTCTCCAAACACAGATGGGATTGATCCAGATTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACGGGTGATGATCTGATTGCCATCAAAAGTGGCTGGGACGAGTATGGCATAGCATTCGGCCGTCCCAGCACAAACATTATCATCAACAGGCTCACCGGGAGGACGGCAACGAGTGCAGGGATTGCCATTGGAAGTGAGATGTCTGGTGGTGTATCAGAAGTCCATGCCCAAGACATTCGCTTCTTCGATTCATACAGCGCCATCAGAATAAAGACTTCTCCAGGGAGAGGTGGTTATGTTAGAAATGTCTTTGTCTCTAACATGACTTTAGAAAATGTTGACATTGCTATCAGGTTCACTGGTACATATGGGGATCATCCTGATGATAAATTTGATCCAAATGCATTACCATTGATAGAAAAGATTACAATCAAGGATGTGATTGGCCAAAACATCAAGCGCGCCGGCCTTCTAGAAGGCATAGAAGGAGACAACTTTGTAAACATCTGTCTATCAAACATCATCCTTAATGTGAGCTCAAGCTATTCATGGAACTGCTCTAATGTCCAAGGATATTCCGATTTCGTTTCGCCGGAAGCTTGCAAGCCTCTCAAGGAGAGAATATTCCCAGAGCATTGTTCAGACTGTTACAATTTATCCAATCACCTGCAAAGTTCAAATAATCAAACAAGAGGTGCTTGGTTACTATCTTGGTAA 1398 0.4392 MRRTSTLVGVLLVLTLISCGPWRVWSSSLCKQTNLEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNPDDWPVVDPLPSYGRGRELPGGRHKSLIYGQDLTDVVITGNNGTIDGQGSIWWSLFRNKTLDYTRPHLVELMNSAGVLISNLTFLDSPFWNIHPVYCSQVTVKKVKILAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIIINRLTGRTATSAGIAIGSEMSGGVSEVHAQDIRFFDSYSAIRIKTSPGRGGYVRNVFVSNMTLENVDIAIRFTGTYGDHPDDKFDPNALPLIEKITIKDVIGQNIKRAGLLEGIEGDNFVNICLSNIILNVSSSYSWNCSNVQGYSDFVSPEACKPLKERIFPEHCSDCYNLSNHLQSSNNQTRGAWLLSW 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00784 465 Gene3D - 27 422 IPR012334 -
Aip06g00784 465 Pfam Glycosyl hydrolases family 28 137 417 IPR000743 GO:0004650|GO:0005975
Aip06g00784 465 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Aip06g00784 465 PANTHER OS07G0245200 PROTEIN 8 450 - -
Aip06g00784 465 PANTHER PECTIN LYASE-RELATED 8 450 - -
Aip06g00784 465 SUPERFAMILY Pectin lyase-like 35 431 IPR011050 -
Aip06g00784 465 SMART pbh1 298 319 IPR006626 -
Aip06g00784 465 SMART pbh1 270 292 IPR006626 -
Aip06g00784 465 SMART pbh1 209 235 IPR006626 -
Aip06g00784 465 SMART pbh1 236 268 IPR006626 -
Aip06g00784 465 SMART pbh1 327 348 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00784 Aip-Chr6 10378317 10381483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00784 1 465 Glycoside Hydrolase AT3G62110 69.767 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00784 - - adu:107492321 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00784 06 10378317 10381483 Aip09g01391 09 24422503 24426360 PCT