LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip06g00688	ATGCGTCGCAACACCAACGGTCGATCGCCGCTGGTGAATCAACAGCGCCAAATCACTGCTTTCTTCTCCAAATCCACTTCTTCTTCTCCTTCTCCTTCTCCAATTCTCTCCGATTCCAAATCCATCAACAACGATAAAACCTCTAAGTTAAACCCTAACCCTAAACTTACCTCTGCGAGCCCTACCCCTCCCACGCCTTCCCCTTCTAATCCCAAACCCATTCTTCTCGTCGGAGCTTCTTCTCCTCTATACTCCGATGACGTCATTGGAAAAAGGATCAAGGTTTATTGGCCTCTTGATAAAGCATGGTACGAAGGTACGGTCAAATCGTTCGATAATGCCACTTCTAAGCATTTAGTGTTATACGACGATGACGAAGAGGAATCGCTCGACCTTTCCAAGGAGAAGTTCGAATGGGTTCAGGATTCTTCATCGTCTGTCAAGAAGCTTAAACGGTTGCGTCGCAGCTGCGACATCCCTGTTGTTAGGAAGATGGTGATTGACGACGATGAGAGTGATGGAAGTCCCAAAAGTGTTGATGATGGTAATTGTGGCAGTGATGATTCGGATGAAGATTGGGGGAAGAATGCGGTGGATGAAGGCGCTGAGGTGGAAGATGACGTGGAGCTAGACAACGAGGAAGATGACTATGAAGATGGTGCTGCAGAGAGGTCTAAAAGAAAGTCAAGTGCGAAGGTGGAGCCCAAGAAACGGAAAATGAGTGGAGCAGAGAAACCGGAGCCTGCAAAAAAGAGCAAGAACGCCGGGGAAGCTGGTGGTGTTAAGGGAGCTTTCAAGTTCTCAGTATTGGAGCCTACAAGTACTCCGGATACTAAAAAGATATCTAACGGCGTTGACAATGTGGCAAATGATGATGCCTCTGAAAGATTTGCGACAAGGGATGCTCAGAAATTTCGCTTTCTCAGAGAAGACCGCAGGGATGCTAAACGAAGGCGTCCTACTGATGAAAATTATGATCCAAGAACTCTCTATTTGCCTCCTGATTTCTTAAGGAGTTTGTCAGATGGCCAGAAACAATGGTGGGAGTTCAAGTCAAAGCATATGGACAAAGTTTTATTTTTCAAGATGGGTAAATTTTATGAACTTTTTGAGATGGATGCACATGTAGGAGTGAAAGAGCTTGACTTGCAGTATATGAAGGGGGAACAACCTCATTGTGGTTTTCCGGAGAGGAATTTCTCAATGAATGTGGAGAAACTTGCTAGGAAGGGTTACCGAGTTCTTGTTATAGAGCAGACTGAAACACCTGTACAGTTAGAGCTTCGTCGCAAGAATGGCTCAAAAGATAAGGTTGTGAGACGGGAAATATGTGCAGTGGTTACAAAAGGCACACTAACTGATGGGGAGTTGCTGTCAGCAAACCCAGAAGCTGCGTATTTGATGGCACTGACAGAGCAACATGAAAACAACGCAAATGAGGTTTCAGAGCGCATTTATGGAGTTTGTATAGTCGATGTTGCCACAAGCAGAATCATTCTTGGACAGTTTAAGGATGACTTGGAATGTAGTGCTTTATGCTGCATCTTGTCTGAGATTAGGCCAGTTGAAATTGTGAAACCTGCTGAAGTGCTCAGTGCTGAAACAGAGAAAGTACTGCTGAAGCATACTAGAAATCCTCTAGTGAATGAATTAGTTCCTAATGTGGAGTTTTGGGATGCTGAAAAAACCGTGGATCAATTGAAGAGAATTTACAGGCACACTGATGAAGTTAGTCTAGAAGATAATGAGCTAGGTTGCTTGCCAGATGTTTTGCTGGAGCTGGTGAAAACTGTCAATGACAATAATAGTGCACTTTCAGCTCTTGGGGGTGCTCTATATTATCTGAAACAGGCTTTCTTAGATGAGGCATTGCTTAGATTTGCACACTTTGAATTACTTCCATGTTCTGGCTTCGGTGATCTTGCCTCAAAACCATACATGGTTCTTGACGCAGCAGCCTTGGAGAATCTTGAAATCTTTGAGAATAGCAGAAATGGAGATTCTTCAGGCACTCTGTATTCCCAATTAAACCATTGTGTTACCGCATTTGGAAAGAGACTACTAAGGGCATGGCTTGCAAGACCATTATGTCATATAGAGTTAATTAAGGATCGCCAGGAAGCCATTGCTGGTTTAAAGGGAGTTAATTTACCTTATGCACTAGAATTTCGAAAAGCTTTGTCAAGGCTACCTGACATGGAGCGATTGCTGGCCCGCATCTTCTCCACTAGTGAAGCTAATGGAAGGAATGCTAATAAAGTGGTTCTGTATGAGGATGCAGCAAAGAAACAACTACAAGAGTTTATTTCTGCTCTTCGTGGTTGTGAACTAATGTTGCAAGCATGCTCTTCTCTTGGCGTTATTCTGAATGATGTCAAATCTAGACTACTCCATCATCTGTTAACACCTGGAAAAGAACTTCCTGATGTCTGCTTGGCTCTGAACCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAACTCAGGCCGTGTAATACCTCATGAAGGAGTTGACCCTGAGTATGACTCAGCCTGTAAGGCAGTTAAAGAAATTGAGTCCAGTTTATCAAAACATCTTATTGAACAAAGGAAATTGCTTGGAGACACATCTATCACTTATGTCACTGTTGGAAAGGACACATACCTTTTAGAAGTCCCAGAAAATTTGCGTGGGAAAGTTCCTCGGGACTATGAGCTGCGTTCATCTAAAAAAGGCTTCTTTAGGTACTGGACTCCTGCTATTAAAAAGTTCCTGGGAGAACTCTCCCAAGCTGAATCTGAAAAGGAGTCCTTATTGAAAAGTACATTGCAGAGATTAATTGGACGCTTTTGTGAAAATCATACTAAGTGGAGGCAATTGGTGTCTACTACAGCTGAGTTGGATGTTTTGATCAGTTTAGCTATTGCTCGTGATTACTATGAAGGGCCAACATGCAGACCAAGTTTTTTAGGCATGCTATCTACCAAAGACAGTCCTTACCTCTCTGCTAAAAGTTTGGGACACCCAGTCCTTAGGAGTGATTCCTTAGGAAAGGGGGCCTTTGTACCCAATGACATATCAATTGGTGGTCAACACGATGCCAACTTTATTCTTCTAACTGGTCCTAACATGGGTGGAAAGTCAACTCTCCTTCGCCAAGTTTGCTTGGCAGTGGTTTTGGCCCAGGTAGGGGCTGATGTCCCAGCAGAGAGTTTTGATTTGTCACCTGTGGACCGTATCTTTGTTCGCATGGGTGCCAAAGATAATATCATGGCTGGCCAGAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACAATGCTGTCTTCAGCCACTCGTAATTCATTGGTGGCTCTTGATGAGCTTGGGCGTGGGACCTCAACTTCTGATGGGCAAGCCATTGCGGAATCTGTTCTAGAACATTTTGTGCGGAAGGTTCAGTGTCGTGGATTGTTTTCTACACATTATCATCGATTAGCTATCGATTATTACAAAGATCCCAAGGTCTCCCTCTGCCATATGGCATGCCAAGTTGGTAGTGGAACAATTGGCGTGGATGAAGTCACCTTTCTTTATAGGCTGACCCCTGGTGCATGTCCCAAGAGTTATGGTGTTAATGTTGCACGGTTGGCAGGGCTTCCAACTTCCGTGCTTCAGAAGGCTGCTGCTAAGTCTAAAGAATTTGAGGCCTCTTATGGTAAATCTAGAAATGCGTCTCTTGAAACAAACTCTCCAAATCAGGAATGGGTTGATGAGATGATAGTTGTAATGAAAATGTTGAACAAGGCTGCTGCAAATTTGAGTTATCAGGAAGGTGGTTGTGACAGCTCCCTCCATGAACTTAAGAGTAGAGCAAGAGAACTTATGCAGCGATGTTAA	3861	0.4369	MRRNTNGRSPLVNQQRQITAFFSKSTSSSPSPSPILSDSKSINNDKTSKLNPNPKLTSASPTPPTPSPSNPKPILLVGASSPLYSDDVIGKRIKVYWPLDKAWYEGTVKSFDNATSKHLVLYDDDEEESLDLSKEKFEWVQDSSSSVKKLKRLRRSCDIPVVRKMVIDDDESDGSPKSVDDGNCGSDDSDEDWGKNAVDEGAEVEDDVELDNEEDDYEDGAAERSKRKSSAKVEPKKRKMSGAEKPEPAKKSKNAGEAGGVKGAFKFSVLEPTSTPDTKKISNGVDNVANDDASERFATRDAQKFRFLREDRRDAKRRRPTDENYDPRTLYLPPDFLRSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVIEQTETPVQLELRRKNGSKDKVVRREICAVVTKGTLTDGELLSANPEAAYLMALTEQHENNANEVSERIYGVCIVDVATSRIILGQFKDDLECSALCCILSEIRPVEIVKPAEVLSAETEKVLLKHTRNPLVNELVPNVEFWDAEKTVDQLKRIYRHTDEVSLEDNELGCLPDVLLELVKTVNDNNSALSALGGALYYLKQAFLDEALLRFAHFELLPCSGFGDLASKPYMVLDAAALENLEIFENSRNGDSSGTLYSQLNHCVTAFGKRLLRAWLARPLCHIELIKDRQEAIAGLKGVNLPYALEFRKALSRLPDMERLLARIFSTSEANGRNANKVVLYEDAAKKQLQEFISALRGCELMLQACSSLGVILNDVKSRLLHHLLTPGKELPDVCLALNHFKDAFDWVEANNSGRVIPHEGVDPEYDSACKAVKEIESSLSKHLIEQRKLLGDTSITYVTVGKDTYLLEVPENLRGKVPRDYELRSSKKGFFRYWTPAIKKFLGELSQAESEKESLLKSTLQRLIGRFCENHTKWRQLVSTTAELDVLISLAIARDYYEGPTCRPSFLGMLSTKDSPYLSAKSLGHPVLRSDSLGKGAFVPNDISIGGQHDANFILLTGPNMGGKSTLLRQVCLAVVLAQVGADVPAESFDLSPVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHFVRKVQCRGLFSTHYHRLAIDYYKDPKVSLCHMACQVGSGTIGVDEVTFLYRLTPGACPKSYGVNVARLAGLPTSVLQKAAAKSKEFEASYGKSRNASLETNSPNQEWVDEMIVVMKMLNKAAANLSYQEGGCDSSLHELKSRARELMQRC	1286

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip06g00688	1286	Pfam	MutS domain II	466	618	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Aip06g00688	1286	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH6	250	1237	-	-
Aip06g00688	1286	SMART	TUDOR_7	85	143	IPR002999	-
Aip06g00688	1286	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	250	1237	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Aip06g00688	1286	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	991	1223	IPR027417	-
Aip06g00688	1286	SUPERFAMILY	DNA repair protein MutS, domain I	329	451	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Aip06g00688	1286	Coils	Coil	915	935	-	-
Aip06g00688	1286	MobiDBLite	consensus disorder prediction	1	77	-	-
Aip06g00688	1286	MobiDBLite	consensus disorder prediction	1	56	-	-
Aip06g00688	1286	Gene3D	-	86	136	-	-
Aip06g00688	1286	Pfam	MutS domain III	653	968	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Aip06g00688	1286	Pfam	MutS family domain IV	837	928	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Aip06g00688	1286	MobiDBLite	consensus disorder prediction	219	252	-	-
Aip06g00688	1286	Gene3D	-	979	1256	IPR027417	-
Aip06g00688	1286	SUPERFAMILY	DNA repair protein MutS, domain III	650	969	IPR036187	-
Aip06g00688	1286	MobiDBLite	consensus disorder prediction	164	258	-	-
Aip06g00688	1286	SUPERFAMILY	DNA repair protein MutS, domain II	461	662	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Aip06g00688	1286	MobiDBLite	consensus disorder prediction	57	71	-	-
Aip06g00688	1286	Gene3D	-	647	968	-	-
Aip06g00688	1286	Pfam	MutS domain I	344	455	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Aip06g00688	1286	Pfam	MutS domain V	1032	1222	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Aip06g00688	1286	MobiDBLite	consensus disorder prediction	202	218	-	-
Aip06g00688	1286	SUPERFAMILY	Tudor/PWWP/MBT	87	128	-	-
Aip06g00688	1286	Gene3D	MutS, connector domain	464	641	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Aip06g00688	1286	Gene3D	DNA repair protein MutS, domain I	299	459	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Aip06g00688	1286	SMART	mutATP5	1028	1220	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Aip06g00688	1286	SMART	DNAend	667	1008	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Aip06g00688	1286	PIRSF	Msh6	1	1275	IPR017261	GO:0006298\|GO:0030983
Aip06g00688	1286	Gene3D	-	813	944	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip06g00688	Aip-Chr6	9138398	9146078	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip06g00688	K08737		-	gmx:100811104	1906.72

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip06g00688	06	9138398	9146078	Aip06g00688	06	9138398	9146078	ECH