Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00655 ATGCAACTGTTCCTCAACTGCTTGCAGAGGTTTCTTGCAACTGCTTCTCAAGAACACCGGAGGAACACACACATGAAAGGTCTAGTGGCTGTGCTTTTGCTTGTAGCATTGAGCACTGCACTGGAAAGCAATGGAGAAGAATATAGTCTTGGGCCATGTGAGCAGAAAGCATGGAACAATGCTAGGCCTCACAGTGTTTCCATCTTGGAATTTGGGGCAGTTGGAGATGGGAAAACTTTGAACACAGTTGCATTCCAAAATGCTATATTCTATCTCAAGTCATTCACTGATAAGGGTGGTGCTCAACTATATGTTCCTTCTGGCAAATGGCTAACTGGAAGTTTAAACCTTATTAGCCACCTCACTCTCTTCCTTGAAAGAGGAGCTACCATCATTGCATCTCAGGACTTTGATCATTGGGATGTTTTGGATTCTCTCCCATCTTATGGTCGGGGAATTAATGTTCCAAGTGGGAGATATCGCAGCTTGATTTATGGACAGAATTTGACTGATGTGGTGATTACAGGTGATAATGGAATTATTGATGGTCAGGGTTCTATCTGGTGGGAACTTTTCAAATCACATTCCTTAAATCACAGTCGACCGCATCTTGTAGAGTTTGTTGATTCTGTTGATGTCACAATTTCCAACTTGACATTTCTAAACTCTCCTGCATGGGACATTCATCCAGTATATTGCAGCAATGTCCAAATTCTGAACATAACAGCTACTGCACCTGCTGAATCTCCATTCACAAGTGGTATAGTTCCAGATTCTTCTCAGAAAGTTTGTATTGAAAGCAGCAACATTAGCACCGGTCATGATGCAATTGTGCTAAAGAGTGGATGGGATCGGTATGGTGTTGCCTTTGGAAAACCAACCTCAAGTGTCCACATCAGGGGTGCTTACCTACAATCATCATCGGGCGCCGGCCTAGCATTCGGGAGTGAGATGTCCGGAGGTATATCTGATGTAACTGCAGAGCAGCTTCATATACTCAACTCCCGCATTGGCATTGAACTGAAGACAACTAAGGGAAGAGGTGGCTATATGAAAGGCATCTTAATTTCTGATGCAGATTTGGTAAATATTGATTTGGGTATCAGCATGAGTGGAAACACTGGTCTCCATCCAGATGAAGAGTATGATCCAAGTGCACTTCCTGTTGTTGATGGCATTACTTTTAAGAACATGATTGGTTCAAATATCACTGTTGCTGGAAACTTTTCAGGATTAATTGATTCACCATTCACAACAATTTGTCTTTCAAACTTGAATTTCTCTGTCAGTTCTTCATGGTCTTGTTCTAATGTGATCGGTTTCTCCAGCGAGGTGTTTCCTGAGCCATGTCCTGAGCTTCATAACTCAGATTCAAAGTCTTCCTCTTGCTTTTCTTCTCTATACTCACCCTCTAGTTATATCTCGAGCTTATTCAATCAACATCCACAAGAATCATAG 1458 0.4204 MQLFLNCLQRFLATASQEHRRNTHMKGLVAVLLLVALSTALESNGEEYSLGPCEQKAWNNARPHSVSILEFGAVGDGKTLNTVAFQNAIFYLKSFTDKGGAQLYVPSGKWLTGSLNLISHLTLFLERGATIIASQDFDHWDVLDSLPSYGRGINVPSGRYRSLIYGQNLTDVVITGDNGIIDGQGSIWWELFKSHSLNHSRPHLVEFVDSVDVTISNLTFLNSPAWDIHPVYCSNVQILNITATAPAESPFTSGIVPDSSQKVCIESSNISTGHDAIVLKSGWDRYGVAFGKPTSSVHIRGAYLQSSSGAGLAFGSEMSGGISDVTAEQLHILNSRIGIELKTTKGRGGYMKGILISDADLVNIDLGISMSGNTGLHPDEEYDPSALPVVDGITFKNMIGSNITVAGNFSGLIDSPFTTICLSNLNFSVSSSWSCSNVIGFSSEVFPEPCPELHNSDSKSSSCFSSLYSPSSYISSLFNQHPQES 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00655 485 PANTHER POLYGALACTURONASE-RELATED 29 469 - -
Aip06g00655 485 PANTHER PECTIN LYASE-RELATED 29 469 - -
Aip06g00655 485 Pfam Glycosyl hydrolases family 28 157 438 IPR000743 GO:0004650|GO:0005975
Aip06g00655 485 Gene3D - 52 445 IPR012334 -
Aip06g00655 485 SUPERFAMILY Pectin lyase-like 59 454 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00655 Aip-Chr6 8548251 8551160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00655 25 465 Glycoside Hydrolase AT3G16850 59.142 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00655 - - aip:107645668 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00655 06 8548251 8551160 Aip06g00655 06 8548251 8551160 ECH