Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00596 ATGGAAACTAGCGCTTCAATGGATGTTGAGGAACAACCACCTTCACCAACACCCAACAACCTTAAACGTTTCGGCATTAAAAACGCTATTCAAACCAACTTCGGCGACGACTACGTTTTCCAAATTGTCCCAAAGGATGATTGGAGTTCAATGGCGGTGTCATTGTCAACGAACGCAGTGAAGCTGTATTCACCATTGGCGGGTCAATACTTTGGAGAGTGCAACGGTCACTCTGCAACCATCAACCAGATTCTGTTTTCGGGTGCTTCCGATCCCAATGTTTTGAGCTCTTGTTCTTCTGATGGAACTATTAGAGCTTGGGACACAAGGACATTTCAGCAGGTTTCTTCCATCAATGCCGGCTCGTCTCAAGAGGTCTTCAGCTTCTCTTATGGAGGGCCTGGGGGAAATTTAATAGCTGCTGGCTGTAAATCGCAGATACTCTTCTGGGACTGGAGAAATAAGAAGCAGATTGCATGCCTTGAAGAATCTCATGTGGATGATGTTACCCAGGTTCATTTTGTCCCTGATGAGCAAAGCAAGCTTATTTCTGCTTCAGTAGATGGGTTGATCTGCACATTTGATACCTCTGGAAATATCAATGATGATGATCATCTAGAATCAGTGATTAATATGGGGACTTCAATCGCAAAGGTCGGGATATTTGGAGGGAGCAGTCCAAAGCTTTGGTGTTTGACGCATATTGAAACCTTAGGTATATGGGACTGGAAAGATGGTAGAAATGAAGTTATCTTCTCGGATGCTCGAACTCTAGCTTCTGAAAGTTGGAATTTGGATCAGATAGACTATTTTGTTGATTGTCACTACTCAAGAGAAGCTGACAAATTATGGCTGATTGGTGGCACCAATGCTGGGACTTTGGGTTATTTTCCTGTAAATTACAGGGGAGTGGCAGCAGTTGGAGCTGCAGAAGCGATTCTTGAAGGTGGCCATACTGATGTTGTTAGGAGTGTGTTACCAATGTCAAGAAATCACAGTGGATTTGCTCCTAGTTCTTCTAACCAAGGTGTTTTTGGATGGACTGGCGGCGAAGATGGTCGGCTATGCTGCTGGCTCTCTGATGATTCCCCCCAAATAAATCAATCATGGATTTCAAGCTCATTGATTATGAAATCCGACAAGACTCGCAAGAAAAATCGTCACCAACCCTACTAG 1176 0.4405 METSASMDVEEQPPSPTPNNLKRFGIKNAIQTNFGDDYVFQIVPKDDWSSMAVSLSTNAVKLYSPLAGQYFGECNGHSATINQILFSGASDPNVLSSCSSDGTIRAWDTRTFQQVSSINAGSSQEVFSFSYGGPGGNLIAAGCKSQILFWDWRNKKQIACLEESHVDDVTQVHFVPDEQSKLISASVDGLICTFDTSGNINDDDHLESVINMGTSIAKVGIFGGSSPKLWCLTHIETLGIWDWKDGRNEVIFSDARTLASESWNLDQIDYFVDCHYSREADKLWLIGGTNAGTLGYFPVNYRGVAAVGAAEAILEGGHTDVVRSVLPMSRNHSGFAPSSSNQGVFGWTGGEDGRLCCWLSDDSPQINQSWISSSLIMKSDKTRKKNRHQPY 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00596 391 SUPERFAMILY WD40 repeat-like 36 361 IPR036322 GO:0005515
Aip06g00596 391 MobiDBLite consensus disorder prediction 1 20 - -
Aip06g00596 391 ProSitePatterns Trp-Asp (WD) repeats signature. 95 109 IPR019775 -
Aip06g00596 391 SMART WD40_4 307 359 IPR001680 GO:0005515
Aip06g00596 391 SMART WD40_4 111 151 IPR001680 GO:0005515
Aip06g00596 391 SMART WD40_4 154 195 IPR001680 GO:0005515
Aip06g00596 391 SMART WD40_4 67 108 IPR001680 GO:0005515
Aip06g00596 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 74 117 IPR001680 GO:0005515
Aip06g00596 391 Gene3D - 36 305 IPR015943 GO:0005515
Aip06g00596 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 74 111 - -
Aip06g00596 391 Pfam WD domain, G-beta repeat 69 108 IPR001680 GO:0005515
Aip06g00596 391 PANTHER UNCHARACTERIZED 21 391 IPR039328 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00596 Aip-Chr6 7793061 7795744 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00596 K24758 - gmx:100787377 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00596 06 7793061 7795744 Aip06g00596 06 7793061 7795744 ECH