Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00589 ATGGCTGTAATTGGAGTTGGTGTGCAGCAACAGTTTTTGTGTTCCTCTGAATCAAAGTGGAGCATTCCAACTACGCCATGCAATCCCCTTACCAGCTCCATTCTCATACGCCCATTCAAAAAGATTCAATTTTCAGTCATTTCATGCTCTTCTTCTTCTTCCTCACCACCGTCACAGGCCGCAGAAGCTGAAACTCAAACTGCTGAATCTTCCGTCAATTTAGGTCTTCAGCTCTTCTCCAAAGGAAGGGTTAAGGATGCTTTAGCCCAGTTTGAAACAGCGCTTACCTTGAATCCCAATCCTGTGGAGGCCCAAGCTGCTTTCTACAACAAAGCTTGCTGCCATGCATACAGAGGGGAAGGAAAGAAAGCTGCAGATAGTCTCCGTACTGCTTTGAGGGAATACAACCTAAAATTTGGTACAATTCTCAATGATCCAGACTTGGCCTCTTTTAGAGCTTTGCCTGAGTTCAAAGAACTACAAGAAGAGGCCAGGATAGGTGGGGAAGATATTGGCAACAGTTTTCGGAGAGATCTAAAACTTATTAGTGAAGTTCAGGCACCGTTTCGTGGGGTTAGGAGGTTTTTTTATGTGGCATTCACAGCAGCTGCAGGAATATCATTGTTCTTCACTCTACCCAGGCTAATCCGTGCAATTCAAGGTGGTGATGGTGCTCCTGATCTACTGGAAACTGCAGGGAATGCTGCCATTAACATTGGAGGCATTGTTGCTTTTGTGGCATTATTTTTTTGGGACAATAAAAAGGAGGAGGAGCAGATTGAACAAATATCTCGAGATGAGACACTATCAAGGCTGCCTTTGCGCTTAACAACTAATCGTGTAGTTGAACTTGTTCAGCTACGGGACACAGTTAGGCCGGTTATATTAGCTGGGAAAAAAGAAACAGTATCTTTGGCTTTGCAAAGAGCAGAACGATTTCGCACTGAGCTCGTTAGACGTGGTGTCCTGTTAGTTCCTGTCATATGGGGAGAAGGTAGGGAAACCAAAACAAAAACAAAAATTGAGAAGAAAGGTTTTGGTCGTCCACAAAAGGCTGCTGAAGCTCTTCCGTCCATTGGGGAAGATTTTGATAAGCGAACACAGTCCATAGCTTCAAAATCGAAGTTGAAAGCAGAAATCAGGTTCAAGGCTGAAGTTGTATCGCAAGCAGAATGGGAACAGTGGATAAGAGATCAGCAGAAATCTGAAGGAGTTACTGTTGGCGAAGACGTGTACATAATAATGCGCTTAGATGGGAGGATTCGAAGATCGGGGAAAGGAATGCCTGACTGGCAGCAAATTGTGAAGGAGCTACCAGAAATGGAAGCATTTTTAAGCAAGCTGGAAAGATGA 1353 0.4412 MAVIGVGVQQQFLCSSESKWSIPTTPCNPLTSSILIRPFKKIQFSVISCSSSSSSPPSQAAEAETQTAESSVNLGLQLFSKGRVKDALAQFETALTLNPNPVEAQAAFYNKACCHAYRGEGKKAADSLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGNSFRRDLKLISEVQAPFRGVRRFFYVAFTAAAGISLFFTLPRLIRAIQGGDGAPDLLETAGNAAINIGGIVAFVALFFWDNKKEEEQIEQISRDETLSRLPLRLTTNRVVELVQLRDTVRPVILAGKKETVSLALQRAERFRTELVRRGVLLVPVIWGEGRETKTKTKIEKKGFGRPQKAAEALPSIGEDFDKRTQSIASKSKLKAEIRFKAEVVSQAEWEQWIRDQQKSEGVTVGEDVYIIMRLDGRIRRSGKGMPDWQQIVKELPEMEAFLSKLER 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00589 450 SUPERFAMILY TPR-like 61 134 IPR011990 GO:0005515
Aip06g00589 450 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 39 450 - -
Aip06g00589 450 Coils Coil 441 450 - -
Aip06g00589 450 ProSiteProfiles TPR repeat profile. 68 101 IPR019734 GO:0005515
Aip06g00589 450 Pfam Low psii accumulation1 / Rep27 176 253 IPR021883 -
Aip06g00589 450 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 39 450 - -
Aip06g00589 450 Gene3D Tetratricopeptide repeat domain 55 153 IPR011990 GO:0005515
Aip06g00589 450 SMART tpr_5 105 138 IPR019734 GO:0005515
Aip06g00589 450 SMART tpr_5 68 101 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00589 - - gmx:100784188 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00589 06 7746167 7749250 Aip06g00589 06 7746167 7749250 ECH