Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00496 ATGAATCAATTGGCGGACTTCGGACGCATATTCCAAATGTTTGATCATGATGACGACGGGAAGATCTCAAAGGAGGAGCTTTTAGAGTCCGTAACAAAACTAGGGTTAGGCGTCATGAAGCATGATTTGATTCAAATGATCGCGAGACTCGACGCGAATGGCGACGGATACGTAGACTTTGACGAGTTTGAGAGGTTGTACAAGAACGTAATGGGTGACGACGACGACGTCTGCGGCGGCGGCGGCGGCGACGGCGACGAGGAAGAGGACATGAAGGAGGCTTTCAAATTGTTCGATCAAAATGGCGACGGGTTTGTTAGTGGTGAGGAATTGAGTTCGGTTTTGTGCTCATTGGGCTTAAGGCAAGGAAAGAAGACCTTAGAGGATTGCAAGAACTTGATCAAGAAAGTGGATTTGGATGGCGATGGCATGCTTGATTTCAAAGAGTTTAAGCAAATGATTAAGCTTGTCAACTAA 477 0.4654 MNQLADFGRIFQMFDHDDDGKISKEELLESVTKLGLGVMKHDLIQMIARLDANGDGYVDFDEFERLYKNVMGDDDDVCGGGGGDGDEEEDMKEAFKLFDQNGDGFVSGEELSSVLCSLGLRQGKKTLEDCKNLIKKVDLDGDGMLDFKEFKQMIKLVN 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00496 158 PANTHER CALMODULIN-LIKE PROTEIN 3 5 155 - -
Aip06g00496 158 Gene3D - 79 155 - -
Aip06g00496 158 SUPERFAMILY EF-hand 2 157 IPR011992 -
Aip06g00496 158 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Aip06g00496 158 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Aip06g00496 158 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 5 155 - -
Aip06g00496 158 CDD EFh 92 155 IPR002048 GO:0005509
Aip06g00496 158 Pfam EF-hand domain pair 88 154 IPR002048 GO:0005509
Aip06g00496 158 Pfam EF-hand domain pair 9 68 IPR002048 GO:0005509
Aip06g00496 158 Gene3D - 1 78 - -
Aip06g00496 158 ProSiteProfiles EF-hand calcium-binding domain profile. 86 121 IPR002048 GO:0005509
Aip06g00496 158 SMART efh_1 129 157 IPR002048 GO:0005509
Aip06g00496 158 SMART efh_1 90 118 IPR002048 GO:0005509
Aip06g00496 158 SMART efh_1 6 34 IPR002048 GO:0005509
Aip06g00496 158 SMART efh_1 42 70 IPR002048 GO:0005509
Aip06g00496 158 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Aip06g00496 158 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Aip06g00496 158 ProSiteProfiles EF-hand calcium-binding domain profile. 125 158 IPR002048 GO:0005509
Aip06g00496 158 ProSitePatterns EF-hand calcium-binding domain. 99 111 IPR018247 -
Aip06g00496 158 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00496 Aip-Chr6 6094037 6094513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00496 5 155 EF-hand Containing Proteins AT2G43290 53.289 8.10e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00496 K13448 - gmx:100806637 181.415