Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00492 ATGAGGGGTTGGTTTGTTTTGCGTCTTAACACTGTAACATTAAGTAATGAGAGATTTTGTGGTTTTAATAGGGTGAGTTTGCAGCTGGGAAAGTTGCCTAGTTTCCGTTTGGTGCAAAATGGTGTCACACCAAGGGCGTATATGTCGTCACTCTCAGCAGCTGAAACTTCTCAGAGGAGTGAAAGTTCAAAAGCTTATGGTTCTGATCAAATTCAGGTACTTGAAGGCTTGGATCCTGTTAGGAAAAGACCTGGAATGTATATTGGAAGCACTGGCCCACGTGGGTTGCACCATTTGGTTTATGAAATTTTGGATAATGCTGTTGACGAGGCACAAGCTGGATTTGCTTCCAAGATTGATGTTGTTTTACAATCGGATGGTTCTGTAAGCATAACTGACGATGGTCGTGGGATTCCTACCGACTTGCATCCAGTTACAAAAAAATCGGCTTTGGAGACAGTGTTGACGGTCTTGCATGCTGGTGGAAAATTTGGCGGGGCCAACAGTGGGTACTCTGTTTCAGGAGGTTTACATGGTGTTGGTTTATCCGTTGTCAATGCCTTGTCTGAGGTGTTAGAGGTAACAGTTTGGCGTGATGGATTAGAATTCAAGCAAAAGTATTCTCGTGGAAAGCCAATAACAACTCTGACATGCCTTGTGCTTTCAAATGAAAAGAAAGATCGTCAGGGAACATCTATAAGATTTTGGCCTGACAAAGAAGTATTCACCACTGCTATTCAGTTTGACTACAACACAATAGCTGGGCGCATTAGGGAGTTGGCCTTCCTCAACCCAAAGCTTACTATCACACTTCAGAAAGAAGATGATGATCCAGAAAAGATCCAATATAATGAATATTTCTTTGCTGGAGGTTTGGTTGAATATGTGAAATGGCTTAACACTGATAAGAAAGCTCTTCACGATGTTCTGAGTTTTAGCAAAGAAACAGATGGAATCAGTATTGATATAGCTTTTCAATGGTGTGAAGATGCATATTCAGACACTATATTGGGATATGCAAATAGTATACGCACTATTGATGGTGGCACCCATATCGATGGTATGAAGGCTTCTTTAACTAGAACACTTAATAGTCTTGGAAAGAAATCAAAAGTTATCAAGGATAAGGACATTACTTTAAGTGGTGAGCATGTGAGAGAGGGTCTAACATGTGTTGTCTCAGTGAAGGTCCCAAATCCAGAGTTTGAAGGACAAACGAAGACAAGATTGGGAAATCCTGAGGTGCGGAAAGTGGTTGATCAAGCTTTGCAAGAGTATCTCTCGGAGTATTTGGAGTTGCATCCAGATGTTCTTGATTCCATACTTTCTAAAGCTGTTAATGCTTTCAAGGCGGCTTTAGCAGCAAAAAGAGCTAGGGAATTGGTGAGACAGAAGAGTGTATTAAGATCTTCATCTCTTCCTGGAAAGCTTGCTGATTGTTCATCCACAAATCCTGAAGAATGTGAAATATTCATAGTTGAAGGTGATTCAGCTGGAGGAAGTGCTAAGCAAGGGCGTGACAGGCGATTCCAGGCCATTCTACCTCTAAGAGGTAAGATTCTGAATATTGAAAGGAGGGATGAAGCTGCAATGTACAAAAATGAAGAGATCCAAAATCTAATTCTCGGTCTTGGCCTTGGAGTGAAGGGAGAAGATTTCAAGATGGAAGCACTCCGATATCATAAGATCATTATTTTGACTGATGCTGATGTAGATGGTGCTCACATTCGAACTCTACTACTAACATTTTTCTTTAGATATCAGAGAGCTTTGTTTGATGAAGGGTGTATATATGTTGGTGTCCCACCACTGTATAAGGTTGTAAGGGGAAAACAAGTAAACTACTGCTATGATGATGCAGACCTTAAAAAACTTCGAAAAACATTTCCTCCAAATGCATCATACACCATTCAAAGGTTCAAAGGGCTGGGAGAGATGATGCCTTTGCAATTATGGGAGACAACCATGGATCCAGAACGCAGGCTATTGAAGCGATTAACGGTTGAGGACGCAGCTGAAGCGAACATTGTTTTTTCATCTCTTATGGGCACTCGGGTGGATGTTCGGAAGGATCTGATAAGAAATTCCGCAAACACGATTGATCTTGATCAGCTAGATATTTGA 2124 0.4115 MRGWFVLRLNTVTLSNERFCGFNRVSLQLGKLPSFRLVQNGVTPRAYMSSLSAAETSQRSESSKAYGSDQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLQSDGSVSITDDGRGIPTDLHPVTKKSALETVLTVLHAGGKFGGANSGYSVSGGLHGVGLSVVNALSEVLEVTVWRDGLEFKQKYSRGKPITTLTCLVLSNEKKDRQGTSIRFWPDKEVFTTAIQFDYNTIAGRIRELAFLNPKLTITLQKEDDDPEKIQYNEYFFAGGLVEYVKWLNTDKKALHDVLSFSKETDGISIDIAFQWCEDAYSDTILGYANSIRTIDGGTHIDGMKASLTRTLNSLGKKSKVIKDKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQALQEYLSEYLELHPDVLDSILSKAVNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSTNPEECEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKMEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVVRGKQVNYCYDDADLKKLRKTFPPNASYTIQRFKGLGEMMPLQLWETTMDPERRLLKRLTVEDAAEANIVFSSLMGTRVDVRKDLIRNSANTIDLDQLDI 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00492 707 SUPERFAMILY Ribosomal protein S5 domain 2-like 291 461 IPR020568 -
Aip06g00492 707 ProSitePatterns DNA topoisomerase II signature. 492 500 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aip06g00492 707 SUPERFAMILY Type II DNA topoisomerase 465 703 IPR013760 GO:0003918|GO:0005524
Aip06g00492 707 Gene3D - 289 468 IPR014721 -
Aip06g00492 707 SMART topII5 95 698 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aip06g00492 707 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 23 707 - -
Aip06g00492 707 Gene3D - 469 707 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aip06g00492 707 PANTHER DNA GYRASE SUBUNIT B 23 707 - -
Aip06g00492 707 Gene3D - 62 288 IPR036890 -
Aip06g00492 707 SMART HKATPase_4 91 241 IPR003594 -
Aip06g00492 707 ProSiteProfiles Toprim domain profile. 488 595 IPR006171 -
Aip06g00492 707 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 66 280 IPR036890 -
Aip06g00492 707 CDD TOPRIM_TopoIIA_GyrB 488 602 IPR034160 -
Aip06g00492 707 Pfam DNA gyrase B 291 460 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aip06g00492 707 Pfam DNA gyrase B subunit, carboxyl terminus 633 693 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aip06g00492 707 PRINTS DNA gyrase subunit B signature 247 262 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aip06g00492 707 PRINTS DNA gyrase subunit B signature 540 549 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aip06g00492 707 PRINTS DNA gyrase subunit B signature 658 670 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aip06g00492 707 PRINTS DNA gyrase subunit B signature 430 444 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aip06g00492 707 PRINTS DNA gyrase subunit B signature 66 76 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aip06g00492 707 PRINTS DNA gyrase subunit B signature 382 398 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aip06g00492 707 PRINTS DNA gyrase subunit B signature 674 690 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aip06g00492 707 PRINTS DNA gyrase subunit B signature 444 464 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aip06g00492 707 PRINTS DNA gyrase subunit B signature 262 275 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aip06g00492 707 PRINTS DNA gyrase subunit B signature 290 312 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Aip06g00492 707 CDD TopoII_Trans_DNA_gyrase 290 447 - -
Aip06g00492 707 CDD HATPase_GyrB-like 96 280 - -
Aip06g00492 707 TIGRFAM gyrB: DNA gyrase, B subunit 66 706 IPR011557 GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265
Aip06g00492 707 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 93 240 IPR003594 -
Aip06g00492 707 Pfam Toprim domain 489 590 IPR006171 -
Aip06g00492 707 PRINTS DNA topoisomerase II family signature 175 189 - -
Aip06g00492 707 PRINTS DNA topoisomerase II family signature 490 504 - -
Aip06g00492 707 PRINTS DNA topoisomerase II family signature 595 607 - -
Aip06g00492 707 PRINTS DNA topoisomerase II family signature 95 110 - -
Aip06g00492 707 PRINTS DNA topoisomerase II family signature 130 143 - -
Aip06g00492 707 PRINTS DNA topoisomerase II family signature 557 573 - -
Aip06g00492 707 PRINTS DNA topoisomerase II family signature 575 592 - -
Aip06g00492 707 PRINTS DNA topoisomerase II family signature 637 653 - -
Aip06g00492 707 PRINTS DNA topoisomerase II family signature 338 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00492 Aip-Chr6 6062114 6070273 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00492 K02470 - gmx:100807172 1181.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00492 06 6062114 6070273 Aip06g00492 06 6062114 6070273 ECH