Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00484 ATGGCGCTGCACTCGGTGCCTTCTGTTTCTCAGCTGCACCGAGAGCCGTTACCGTCGTCGATCTTAGCTGCCGGAACCGACTCGCGTCTTCTACTCCAGTTCGCGACTCTCGGCTCCAACAAGTCAGCGCGTCGTCGCCGCCGCCTCTCTGCTTTTCCTTCTACACCAGCTGCGCCGCTACGTCGTCGTTCTGCTGTCAGAGCTGTTCTCGAACTCGACCGATGCAGCAGTGACAAGAGTAGCAGCGGAGTTCGCCATTCTCAACCTTCCGATGTCAAACCACAGGTTGCAAACTTGGAGGACATAATATCAGAAAGAGGAGCCTGTGGTGTTGGATTCATTGCCAATTTGGAAAATAAAGCATCACATGATATTGTAAAGGATGCTCTAAATGCTTTGGGCTGTATGGAACATCGTGGTGGCTGTGGGGCAGATAATGACTCTGGTGATGGATCAGGGCTGATGACTTCAATTCCATGGGATCTATTTGACAATTGGGCAGATAAGCAAGGGATTGCTTCCTTTGATAAGTTGCACACTGGTGTTGGGATGGTTTTCCTACCCAAAGAAGTTGAACTTCTGAATGAGGCCAAGAAAGTTATTGTAAATATTTTTCGGCAAGAAGGTCTTGAGGTGCTTGGGTGGAGACCTGTCCCTGTAAATAGTTCTGTGGTAGGTTATTATGCGAAGGAGACCATGCCCAACATACAGCAGGTATTTGTTAAGATTGTGAAAGAAGAAAATGTTGATGACATTGAACGAGAACTGTACATCTGTCGGAAATTGATTGAAAAAGCAGTAAGCTCAGAAACTTGGGGAAGTGAGACTTATTTCTGTTCTTTATCCAATCAAACAATAGTTTACAAGGGGATGCTTCGCTCAGAAGTTCTTGGGTTATTTTATTCTGACCTTCAAAATGATCTTTACAAGTCCCCCTTTGCCATTTATCATCGAAGATATAGTACAAATACCAGTCCCAGATGGCCACTTGCACAACCAATGCGGCTTCTTGGTCACAATGGAGAGATCAATACCATACAGGGGAATTTGAACTGGATGCAATCAAGAGAGACATCGTTAAAGTCGCCTGTATGGCGAGATCGTGAAAATGAAATTCGTCCATTTGGAAATCCAAAGGCATCAGACTCAGCAAATCTTGACAGTGCTGCAGAATTATTAATAAGAAGTGGTCGCAGTCCTGAGGAAGCTATGATGATTCTTGTTCCAGAGGCTTACAAAAATCATCCAACACTGTCAATCAAATACCCTGAGGTGGTTGACTTCTATGACTACTACAAGGGTCAGATGGAAGCTTGGGATGGACCAGCTTTGCTTTTATTCAGTGATGGAAAAACTGTTGGTGCATGTCTTGACCGTAATGGACTCCGACCTGCTCGGTATTGGCGAACATCAGACAATATGGTCTATGTGGCCTCTGAGGTTGGTGTGGTACCGGTGGATGATTCGAAGGTTATCTTGAAAGGCCGATTAGGTCCAGGCATGATGATAACAGTTGATTTGAATGGTGGTCAGGTGTATGAGAATACAGAGGTTAAAAAGCGAGTAGCCTTATCAAACCCATACGGGAACTGGATTAAGGAAAATATGCGGCCTTTGAAGCCTGTGAACTTCCTTTCAGCAGCTATGATGGACAATGATGCAATATTAAGACACCAACAGGCATTTGGGTACTCTAGTGAAGATGTCCAGATGGTGATCGAATCCATGGCTGCTCAAGGAAAGGAGCCCACATTTTGCATGGGAGATGATATTCCATTGGCTGCATTGTCTCAGAAGCCTCACATGCTTTTTGATTATTTTAAGCAACGGTTTGCACAGGTTACAAATCCTGCTATTGATCCACTTCGAGAAGGATTGGTTATGTCTCTTGAAGTCAATATAGGGAAGCGAAGGAATATTTTGGAAGTTGGACCACAGAATGCTTCTCAGGTTACATTGTCTAGCCCTGTACTGAATGAAGGAGATCTTGAGCTGTTACAAAAAGATGCCCACTTAAAACCACATGTATTGCCCGTATTTTTTGATATAAGTAAGGGGATTGATGGTTCCGTGGAGAAAGCATTAAATAAGCTTTGTGAAGCTGCAGATGAAGCTGTTAGAAATGGTTCCCAGTTGCTAATTCTTTCAGACCGCTCAGATTCACTGGAACCAACACATCCTGCAATTCCAATACTTCTTGCTGTTGGGACAGTTCATCAGCATCTAATCCAAAATGGCCTGCGGATGTCAGCTTCAATTGTAGCAGACACTGCTCAGTGCTTTAGCACTCATCAGTTTGCGTGCTTAATAGGATATGGTGCAAGTGCTGTCTGTCCATACTTGGCATTGGAGACATGTCGACAGTGGCGTTTGAGTAACAAAACTGTAAACCTGATGAGGAATGGAAAGATGCCTACTGTCTCAATTGAGCAGGCCCAGAATAATTACACCAAGGCTGTAAAAGCGGGTCTTCTTAAAATCCTTTCCAAAATGGGGATCTCATTGCTTTCAAGTTACTGCGGTGCACAGATTTTTGAAATCTATGGATTAGGAAAGGAAGTTGTCGATCTTGCATTCAGAGGAAGTATGTCAAAAATTGGGGGATTAACTTTTGACGAGTTAGCGAGAGAGACTCTGTCTTTCTGGGTGAAGGCATTTTCTGAAGATACGGCCAAAAGATTGGAAAATTTTGGATTTATTCAGTTCAGACCGGGAGGGGAGTATCATGCAAATAACCCAGAGATGTCAAAGTTGCTCCACAAAGCTGTTCGTCAAAAAAGTCAAAGTGCCTTTTCAGTTTATCAGCAGCATTTGGCTAACCGACCTGTGAATGTTCTTCGTGATCTTCTTGAGTTCAAAAGTGATCGAGCTCCAATACCTGTAGGGAAGGTTGAACCTGCTTCAGCTATTGTGCAACGGTTCTGCACTGGTGGGATGTCTCTTGGAGCTATTTCAAGAGAAACTCATGAAGCAATTGCAATTGCAATGAACAGATTAGGTGGAAAATCAAATTCAGGGGAAGGTGGTGAGGATCCTATTCGCTGGAAACCACTTACGGATGTTGTCGATGGTTACTCTCCAACTCTTCCACATCTTAAAGGTCTTCAGAATGGGGATACTGCTACCAGTGCTATCAAGCAGGTTGCTTCAGGAAGGTTTGGTGTTACCCCAACATTCTTGGCAAATGCTGATCAATTAGAAATCAAGATTGCCCAAGGTGCAAAGCCTGGGGAAGGTGGACAATTGCCTGGGAAAAAAGTTAGCATGTATATTGCTAGGTTGAGAAATTCCAAACCAGGGGTTCCGCTTATCTCTCCACCTCCTCATCATGACATTTATTCTATTGAGGACCTTGCTCAGTTGATCTTTGATCTTCATCAGGTGAATCCTAAGGCCAAGGTTTCTGTAAAACTGGTGGCGGAAGCTGGAATTGGTACTGTTGCATCTGGGGTCGCCAAGGGCAATGCCGATATTATCCAGATTTCAGGGCATGATGGTGGAACAGGAGCAAGCCCTATAAGTTCCATCAAGCATGCTGGTGGTCCTTGGGAACTTGGTCTTACAGAATCTCACCAGACACTCATTGAAAATGGACTCAGGGAAAGGGTAATTCTCAGAGTTGATGGAGGATTTCGAAGTGGAGTTGATGTCATGATGGCAGCAGTAATGGGTGCTGATGAATATGGATTTGGTTCAGTGGCAATGATTGCTACTGGTTGTGTTATGGCCCGTATTTGCCACACCAATAATTGTCCAGTTGGTGTTGCCAGTCAGAGGGAAGAGTTGCGTGCACGCTTTCCTGGTGTTCCTGGTGATCTTGTCAACTACTTTTTGTATGTTGCTGAGGAGGTAAGAGGCATATTGGCACAGCTTGGGTATGAGAAATTAGATGATGTAATTGGCCGGACAGAGTTGTTGCAACCAAGAGACATATCTCTAGTGAAAACTCAACATCTAGACCTAAATTATCTCCTCTCTAGTGTGGGGTTGCCTAAATGGAGCAGTACAACAATTAGGAATCAGGAGGCTCATACTAATGGCCCTGTTCTGGATGATGTCTTGCTAGCTGATCCAGAGATTGCAGATGCCATAAAAAATGAGAAAGTAGTTAGTAAGACCATAAACATATACAACGTTGATCGTGCTGTTTGTGGGCGGTTAGCTGGTAGCATTGCAAAGAAGTATGGTGACACTGGTTTTGCTGGACAACTGAATATAACATTTACTGGAAGTGCCGGACAGTCATTTGGGTGCTTTTTGACACCCGGAATGAACATTCGCCTGATAGGAGAGGCTAATGATTATGTGGGGAAGGGCATGGCTGGAGGGGAGTTGGTTGTCACTCCAGTTGAAAAGACAGGGTTTCAACCCGAAGACGCAGCTATTGTGGGGAACACTTGCTTGTATGGGGCCACAGGTGGGCAGGTCTTTGTTAAAGGGAAGGCTGGGGAGAGATTTGCTGTGAGAAACTCACTTGCTGAAGCTGTGGTTGAAGGCACAGGAGATCATTGCTGCGAGTACATGACCGGTGGCTGTGTTGTTGTCCTCGGAAAAGTGGGGAGAAATGTAGCTGCTGGAATGACTGGAGGGTTGGCTTACATTCTTGATGAGGACGATACTCTTATACCCAAGGTAAATAAAGAAATTGTGAAAATCCAGAGAGTCTCAGCACCTGTGGGGCAGATGCAGCTGAAAAGTCTAATTGAAGCCCATGTTGAAAAAACCGGTAGCAACAAAGGTGCAGTTATTCTGAAGGACTGGGACAAGTATTTACAACTATTCTGGCAATTGGTTCCACCTAGCGAAGAAGACACCCCTGAGGCCAATCCCAAGTACGAAACATCTTCTGCAGAGCAGGTCACCACTTCTTTGCAGTCTGCGTAG 4884 0.447 MALHSVPSVSQLHREPLPSSILAAGTDSRLLLQFATLGSNKSARRRRRLSAFPSTPAAPLRRRSAVRAVLELDRCSSDKSSSGVRHSQPSDVKPQVANLEDIISERGACGVGFIANLENKASHDIVKDALNALGCMEHRGGCGADNDSGDGSGLMTSIPWDLFDNWADKQGIASFDKLHTGVGMVFLPKEVELLNEAKKVIVNIFRQEGLEVLGWRPVPVNSSVVGYYAKETMPNIQQVFVKIVKEENVDDIERELYICRKLIEKAVSSETWGSETYFCSLSNQTIVYKGMLRSEVLGLFYSDLQNDLYKSPFAIYHRRYSTNTSPRWPLAQPMRLLGHNGEINTIQGNLNWMQSRETSLKSPVWRDRENEIRPFGNPKASDSANLDSAAELLIRSGRSPEEAMMILVPEAYKNHPTLSIKYPEVVDFYDYYKGQMEAWDGPALLLFSDGKTVGACLDRNGLRPARYWRTSDNMVYVASEVGVVPVDDSKVILKGRLGPGMMITVDLNGGQVYENTEVKKRVALSNPYGNWIKENMRPLKPVNFLSAAMMDNDAILRHQQAFGYSSEDVQMVIESMAAQGKEPTFCMGDDIPLAALSQKPHMLFDYFKQRFAQVTNPAIDPLREGLVMSLEVNIGKRRNILEVGPQNASQVTLSSPVLNEGDLELLQKDAHLKPHVLPVFFDISKGIDGSVEKALNKLCEAADEAVRNGSQLLILSDRSDSLEPTHPAIPILLAVGTVHQHLIQNGLRMSASIVADTAQCFSTHQFACLIGYGASAVCPYLALETCRQWRLSNKTVNLMRNGKMPTVSIEQAQNNYTKAVKAGLLKILSKMGISLLSSYCGAQIFEIYGLGKEVVDLAFRGSMSKIGGLTFDELARETLSFWVKAFSEDTAKRLENFGFIQFRPGGEYHANNPEMSKLLHKAVRQKSQSAFSVYQQHLANRPVNVLRDLLEFKSDRAPIPVGKVEPASAIVQRFCTGGMSLGAISRETHEAIAIAMNRLGGKSNSGEGGEDPIRWKPLTDVVDGYSPTLPHLKGLQNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSMYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLVAEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTESHQTLIENGLRERVILRVDGGFRSGVDVMMAAVMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNYFLYVAEEVRGILAQLGYEKLDDVIGRTELLQPRDISLVKTQHLDLNYLLSSVGLPKWSSTTIRNQEAHTNGPVLDDVLLADPEIADAIKNEKVVSKTINIYNVDRAVCGRLAGSIAKKYGDTGFAGQLNITFTGSAGQSFGCFLTPGMNIRLIGEANDYVGKGMAGGELVVTPVEKTGFQPEDAAIVGNTCLYGATGGQVFVKGKAGERFAVRNSLAEAVVEGTGDHCCEYMTGGCVVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKIQRVSAPVGQMQLKSLIEAHVEKTGSNKGAVILKDWDKYLQLFWQLVPPSEEDTPEANPKYETSSAEQVTTSLQSA 1627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00484 1627 MobiDBLite consensus disorder prediction 1610 1627 - -
Aip06g00484 1627 Pfam Glutamine amidotransferases class-II 109 531 IPR017932 -
Aip06g00484 1627 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 109 535 IPR029055 -
Aip06g00484 1627 Pfam Glutamate synthase central domain 558 850 IPR006982 GO:0006807|GO:0015930
Aip06g00484 1627 SUPERFAMILY FMN-linked oxidoreductases 552 1331 - -
Aip06g00484 1627 CDD GltS 109 526 - -
Aip06g00484 1627 Pfam GXGXG motif 1375 1557 IPR002489 GO:0016491
Aip06g00484 1627 PANTHER FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, CHLOROPLASTIC/MITOCHONDRIAL 83 1622 - -
Aip06g00484 1627 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 109 508 IPR017932 -
Aip06g00484 1627 Gene3D - 1331 1606 IPR036485 GO:0016491
Aip06g00484 1627 CDD GltS_FMN 912 1307 IPR002932 GO:0006537|GO:0015930|GO:0016638
Aip06g00484 1627 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 83 1622 - -
Aip06g00484 1627 Gene3D Aldolase class I 583 1309 IPR013785 -
Aip06g00484 1627 Gene3D Aldolase class I 535 901 IPR013785 -
Aip06g00484 1627 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 109 645 IPR029055 -
Aip06g00484 1627 MobiDBLite consensus disorder prediction 1601 1627 - -
Aip06g00484 1627 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1344 1606 IPR036485 GO:0016491
Aip06g00484 1627 CDD gltB_C 1350 1600 IPR002489 GO:0016491
Aip06g00484 1627 Pfam Conserved region in glutamate synthase 909 1293 IPR002932 GO:0006537|GO:0015930|GO:0016638
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00484 Aip-Chr6 5862356 5880062 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00484 K00284 - gmx:548016 2972.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00484 06 5862356 5880062 Aip06g00484 06 5862356 5880062 ECH