Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00476 ATGGCGGAAGCGATGATGGTGGAGAACGGCAACGGAAACGGCAAGGAGGACTTGGGTGAGTGCTTGATCGGATACTTCGACGAAGGTAGCCATGAGTCCCACAGGTACTACCTCTCCCGAAGAACCACCCTAGAGATGCTCAAGGACAGAGGCTACTCCATCCCTGCTTCTGAAATCGACCTCTCTCTCTCCCAATTCAGAGCCATTCACGGTGATTCCCCCGACGTCGACCGCCTCCGCTTCTCCGCCACTCACCTCTCTGATCCTTCCAAGAGGATTTTAGTTATCTTCTGTGGCCAACACATTGTGAAAGTTACTTCCATCCGCAGCATTGCAGCGCAGATTGTCAATAGAGAAACTTTAAGTGGCCTCATTTTGATTGTTCAAAGTACTATTACTAGCCAGGCCTTGAAAGCTGTCAATCTTTTCTCATTCAAAGTTGAAATCTTTCAGATCACAGACTTGCTTATTAATATTACAAAGCATGTATTGAAGCCAAAGCATGAAATTCTAACTGACAAACAGAAAAAGAACCTCCTAAAGAAGTACAATTTAGAAGAAAAGCAGCTACCCCGCATTCTACAAACAGATGCAATTGCAAGATACTATGGACTAGAGAAAGGGCAAGTAGTTAAGATAACTTACAGTGGTGATATCACTCAGATGCATGTCGCCTATCGATGCGTTTGGTGA 693 0.4502 MAEAMMVENGNGNGKEDLGECLIGYFDEGSHESHRYYLSRRTTLEMLKDRGYSIPASEIDLSLSQFRAIHGDSPDVDRLRFSATHLSDPSKRILVIFCGQHIVKVTSIRSIAAQIVNRETLSGLILIVQSTITSQALKAVNLFSFKVEIFQITDLLINITKHVLKPKHEILTDKQKKNLLKKYNLEEKQLPRILQTDAIARYYGLEKGQVVKITYSGDITQMHVAYRCVW 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00476 230 Pfam RNA polymerase Rpb5, N-terminal domain 31 114 IPR005571 GO:0003677|GO:0003899|GO:0006351
Aip06g00476 230 Gene3D - 27 154 IPR036710 GO:0003677|GO:0003899|GO:0006351
Aip06g00476 230 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A 14 230 - -
Aip06g00476 230 PIRSF RPB5 25 230 IPR014381 -
Aip06g00476 230 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 14 230 IPR014381 -
Aip06g00476 230 Pfam RNA polymerase Rpb5, C-terminal domain 157 229 IPR000783 GO:0003677|GO:0003899|GO:0006351
Aip06g00476 230 SUPERFAMILY RPB5-like RNA polymerase subunit 155 230 IPR035913 -
Aip06g00476 230 Gene3D - 155 230 IPR035913 -
Aip06g00476 230 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 31 158 IPR036710 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00476 Aip-Chr6 5775785 5776824 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00476 K03013 - gmx:100306033 335.495