Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00445 ATGGCATTTCTAACTCGCCTCCATTCCTTCGCAAGGCCCTTCTCCTCTCTCCTCTCCACCTCGCGCCAGAGTGGAGGTAGAGCAATAATGACCAAGATGGACATGAACATGTGCTCGCTTTCTCCAGCTGTTTCAACTGAAGCCTCAGATTTAGAATTTGAAGTGATCCATGATGATGTCAAAGCAACAGAAAAAGATGATGCACTTCGCTTGGCTGTCTCACAGCTTGCTAATGAGTTTAGTGAGGAATCAATGTTATCTTTGCAGAAGTTTTTCGGTGTGCGCCGCGCTCAAGTGATATCTACAGGCTCCTTGAAGCTTGACATAGCTCTTGGAATGGGAGGATTGCCAAAGGGTAGGATTGTTGAAATTTATGGACGAGAAGCAGCTGGCAAGACAACACTTGCACTTCAAGTTATTAAAGAAGCTCAAAAGCATGGAGGATATTGTGCATATCTTGATGTAGAGAATGCATTGGACGCTTCACTTGTGGAATCAATAGGTGTGAATACCGAAAAACTTCTTGTCTCGCATCCAGACTGTGCTGAAAATGTGTTGAGCATGGTTGATACATTAACGAAAAGTCGAGCTGTAGATGTGATTGTGGTTGATAGTGTTGCTGCCCTTCTACCCAAGCGTGAACTTGATCAGTTAGGTGTTAGCACCAAACTAGATTTACAACCCCGACTGATGACCCAAGCACTGCGGAAAATTCAGTATTCATTATCACATTCACAAACTCTTATCATTTTTGTTAATCAGATTAGATTTAGTCCAAAATCAGCTAAGGGATGTGGACCTGCAGAAGAGGTAACTTGTGGTGGAAATGCTTTGAGATTCTATGCTGCTGTTCGATTGAGACTTTCGAGAATGGGATTGATCAAAACTGATGATAAGGTGGAGGGTCTTCGGGTCTGTGTGCAAGTGGCGAAAAATAAGCTAGCACCAGCAGCACTCAAAAAGGCCGAACTAGGCATCAAGTTTGGAGGAGGCTTTTGCCACGAAGCAGAGGTCTTAGATTTGGCTTGTGAACATGGAATGATTGTCAAAGACGAGGAAAGCTACCTTATAGAAGGAAATACTTTCGATACTAGAAAAGCGGCCGAAGTGTATTTGGCAGAGGATGACAGGGTCTTTGACAAGTTGTCCTTTTCAACTGTGAAATGTTCTTCCATGCCTTCTACCATTCTCTGCTCATTATTAGTGCTACTAATTGCTGGCACGGCCACAACAGAAGCAACAGGTGTATGCTATGGAAACATGGGAAGCAACTTGCCATCGGCACAAGAAGTGGTTGCACTCTACAAACAATATAACATTCCAAGGATGCGAATCTACGGTCCAGACCAGAATGTTCTGGAAGCCCTTCGCGGCTCCAACATCGAGCTCTTCATGGACATTCCAAAGGAAACTCTAGCACCCTTAGCAGCCACCCAAGACAACGCCAACAAATGGGTCCAGCAATACGTAAGAAACTATGGTAATGTGAGGTTCAGATACATCTCCGTTGGAAACGAAGTCAAACCAAGTGAAACTTATGCGCAGTATGTGGTGCCCGCCATGAACAACATCCAGAATGCTCTAAATGCTGCTGGACTTGGTAACCAGATCAAGGTTTCCACCACCATTGAGACCGGTGCTTTAGGACAATCCTACCCTCCATCGCAGGGTTCCTTTAATGGTGATTACAGAGCCGCATATCTTGATGGTGTCATAAGGTTCTTGGTGAATAATCGATCACCGTTGCTTGTGAATGTGTACCCTTACTTTAGCTACTTCTTCAACCAAAGAGACATTCGTCTAGACTACGCGCTTTTCACCGCTCCTTCTGCTTTGGTCACCGATGGCTCCCTACATTACCAGAACCTCTTTGATGCAATCGTCGACGCCACGTATTCCGCGTTGGAGAAAGCCGGCGGAGGCTCCCTGGAGATAGTTGTGGCGGAAACTGGATGGCCCTCCGACGGCGGTGTGGCCACTTCACTGGACAACGCAAGGACTTATAACACCAAGTTGGTTGAGCATGTGAAGCTTGGGACTCCAAAGAGGCCTGGCAGACCCATTGAGACCTATGTTTTTGCCATGTTTGATGAGAATAATAAGAACCAGTCACCGCCATATACTTATGAGAAATTTTGGGGGCTCTTCCTGCCAAATAAACAGCCTAAGTACCCTATTAATCTCAATTAG 2190 0.4539 MAFLTRLHSFARPFSSLLSTSRQSGGRAIMTKMDMNMCSLSPAVSTEASDLEFEVIHDDVKATEKDDALRLAVSQLANEFSEESMLSLQKFFGVRRAQVISTGSLKLDIALGMGGLPKGRIVEIYGREAAGKTTLALQVIKEAQKHGGYCAYLDVENALDASLVESIGVNTEKLLVSHPDCAENVLSMVDTLTKSRAVDVIVVDSVAALLPKRELDQLGVSTKLDLQPRLMTQALRKIQYSLSHSQTLIIFVNQIRFSPKSAKGCGPAEEVTCGGNALRFYAAVRLRLSRMGLIKTDDKVEGLRVCVQVAKNKLAPAALKKAELGIKFGGGFCHEAEVLDLACEHGMIVKDEESYLIEGNTFDTRKAAEVYLAEDDRVFDKLSFSTVKCSSMPSTILCSLLVLLIAGTATTEATGVCYGNMGSNLPSAQEVVALYKQYNIPRMRIYGPDQNVLEALRGSNIELFMDIPKETLAPLAATQDNANKWVQQYVRNYGNVRFRYISVGNEVKPSETYAQYVVPAMNNIQNALNAAGLGNQIKVSTTIETGALGQSYPPSQGSFNGDYRAAYLDGVIRFLVNNRSPLLVNVYPYFSYFFNQRDIRLDYALFTAPSALVTDGSLHYQNLFDAIVDATYSALEKAGGGSLEIVVAETGWPSDGGVATSLDNARTYNTKLVEHVKLGTPKRPGRPIETYVFAMFDENNKNQSPPYTYEKFWGLFLPNKQPKYPINLN 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00445 729 Pfam recA bacterial DNA recombination protein 68 332 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip06g00445 729 PANTHER DNA REPAIR PROTEIN RECA HOMOLOG 2, MITOCHONDRIAL 20 382 - -
Aip06g00445 729 PRINTS RecA protein signature 226 255 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip06g00445 729 PRINTS RecA protein signature 188 217 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip06g00445 729 PRINTS RecA protein signature 154 183 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip06g00445 729 PRINTS RecA protein signature 274 302 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip06g00445 729 PRINTS RecA protein signature 308 337 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip06g00445 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 319 IPR027417 -
Aip06g00445 729 PANTHER RECA 20 382 IPR013765 GO:0003697|GO:0005524|GO:0006281
Aip06g00445 729 ProSiteProfiles RecA family profile 2. 266 337 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Aip06g00445 729 ProSitePatterns recA signature. 277 285 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Aip06g00445 729 ProSitePatterns Glycosyl hydrolases family 17 signature. 643 656 IPR000490 GO:0004553|GO:0005975
Aip06g00445 729 Gene3D - 95 391 IPR027417 -
Aip06g00445 729 SMART AAA_5 118 292 IPR003593 -
Aip06g00445 729 Gene3D Glycosidases 413 729 - -
Aip06g00445 729 ProSiteProfiles RecA family profile 1. 96 255 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Aip06g00445 729 SUPERFAMILY (Trans)glycosidases 415 727 IPR017853 -
Aip06g00445 729 Pfam Glycosyl hydrolases family 17 415 727 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00445 Aip-Chr6 5265864 5273008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00445 403 728 Glycoside Hydrolase AT3G57270 61.162 8.02e-137 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00445 - - aip:107645515 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00445 06 5265864 5273008 Aip06g00445 06 5265864 5273008 ECH