Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00411 ATGGCCACTACCACCACCGTACCTCACTGTCTCTACCAACTTGGGGGCACAGCCGCCCCTGAGTCAACTCGCATGCAAACCGCCATCTTTTGCAAGAAAAAATCCAGTAAGACGGCATTCGAGGAGACAAAGCAAGGCTTCGTGGACTACGACCGCGGCCAGCACGACGTCTCCGACAGGCTCTCCGGCCTCCGGAAGGACGACATCCCCGGCCGCTACCGCGAGTTGACGCAGAGAGGGTCGATTGAACACTGTATCGCAGTGTTCCGGTGGATGAAGAACCAGAAGAACTACTGTGCGCGTAATGATATATACAACATGATGATTAGGTTGCATGCTAGGCATAACCGAACTGACCAGGCGCGTGGATTGTTCTTTGAGATGCAAGAATGGAGGTGTAAACCTGATGCTGAGACTTATAATGCTCTTATCAATGCGCATGGTCGAGCTGGACAGTGGCGTTGGGCGATGAATATCATGGATGACATGCTGCGAGCTGCTATTCCACCAAGCCGGTCAACTTATAACAACTTGATAAACGCCTGTGGCTCTAGTGGAAATTGGAAAGAAGCACTTAATGTTTGCAAGAAAATGACAGACAATGGAGTTGGGCCTGATCTTGTTACACACAATATTGTGTTATCTGCATTTAAAAGTGGGGCTCAGTATTCAAAAGCTCTGTCTTATTTTGAACTAATGAAGGGAACTCACATTCGTCCTGACACAACTACCCTTAACATTATTATCCATTGTCTTGTGAAGCTTCAACAATATGACAAAGCCATCGATATTTTCAATTCCATGAGGAGAAATAAGTCTGATTGTCGTCCTGATGTTGTAACTTTTACCAGCATCATACACTTGTATTCTACATGTGGGCAAGTTGAAAATTGCGTGGCTGCATTTAATATGATGCTTGCAGAAGGGCTGAAACCCAACACAATCTCATATAATTCATTAATTGGTGCATATGCTGCTCGCGGGATGGACAAGGAGGCACTTGCGGTTTTCAATGAGATCAAACAAAATGGTTTCTGGCCAGATATTGTGTCCTATACATCTTTGCTTAATGCTTATGGAAGATCACAAAAGCCTCAAAAGGCAAGGGAAATATTTGCAATGATAAAGAAAAACAGATTGAAGCCTAACATTGTTACTTACAATGCACTAATTGATGCCTATGGATCTAATGGTTTGTTGGCGGAGGCAATTGAAATATTGCGTGAGATGGAACAAGATGGAATTTATCCAAATGTTGTCTCAATATGCACTCTCTTGGCTGCCTGTGGGCGGTGCAGTCAGAAGGTGAAGATTGATACAATCCTATCAGCAGCTGAGATGCGAGGCATTAAATTGAATACGGTTGCCTATAATTCAGCTATAGGAGCCTATATGAATGTGGGGAAATATGACAGAGCTGTAGGCTTGTATAAATCTATGAGGAAGAAAAATATAAAACCTGATTCTGTTACTTACACTGTGTTGATAAGTGGTTGTTGTAATATGTCAAAATATAGTGAAGCCCTAGTTTTCATGGAAGAAATGATGCATCTTAGACTAACTTTGTCCAAAGAGGTCTACTCTTCTGCCATATGTGCTTACAGCAAACTGGGACAAGTCATAGAAGCAGAATCCACATTCAACTTGATGAAATCATCTGGTTGCTATCCTGATGTAGTTGCATACACTGCAATGCTTGATGCATACAATGCAGGAGAGAATTGGGAAAAGGCATATGCACTCTTTGAAGAAATGGAAGTAAATGGCATCAAGCTAGATACGATTGCATGTGCTGCCCTGATGAGAGCTTTTAATAAAGGTGGTCAACCAGGAAGGGTCCTCAGTCTTGCAGAAAGTATGAGAGAAAAAGATATTCCTTTCAGTGATACCATTTATTTTGAAATGGTATCTGCCTGTAGCATAAACAGAAGCAGGCAGAAGCAGAATGCAGAAGCAAAAAGCAAAAGCAGTGAAACAACAACCACTAGAAGAATAACACCAACAACAATGGATAATGAAATCAGAGCAACAACAAAAGCAAAACTAGAAGCAAAAGCAAAAACAGAAACAGAAGCAGCAATGGCGAGGAGCATCAACGACCGAGCGAGGAGGAGGAGTAGAAACGATGAGCGGCGCGCGAGTGGCGGCGGTGGCACTAAACGCGGTCTCCCTCTCCCTTCCGATCTCTTTCTTCTCCCTTGCTCTCTGTCTCCCCCCTCTTCATCCCCCCCTTTCCCTTTCCCTTTCCCTTTCCCTCTCCATCGCAGCCCCCTTCCCTCTCCTTCCCTCTCATATCATCTCATCTCATCTCATCTCATTTCTGCAATAAAAAAGAATAACAATCTAATATCTCAAAATTCCATCCTTTCAAAGCAACTACAAACCAAAACAATAGTGGATCTAGCACTAGAGGAGCTACAATTCCTGAACATCCCAGAAATCTGTTACCTTTTCTTCCTCTTCGCTTTCTCTCTCCTCTCCACCGCCGCCTCCGTCTTTACCGTCGCTTCCCTCTACACCAACAAAGATGTCTCCTTTTCCTCCACCATCTCTGCAATCCCCAAAATCTTCAAGCGTTTGTTCATCACTTACCTCTGGGCCACGCTTTTGATGTTCATCTGTAACTTTGTCTTCGTGATTTTCTTAGTTTTGCTTATTATAGCAATTGATACACAGAACTCGTTTCTGCAGTTTTTCACGGTTATTGTGGGTGTGTTGGTCATTGTGAATTTGGTGGGATTGTTGGTGTAG 2751 0.4348 MATTTTVPHCLYQLGGTAAPESTRMQTAIFCKKKSSKTAFEETKQGFVDYDRGQHDVSDRLSGLRKDDIPGRYRELTQRGSIEHCIAVFRWMKNQKNYCARNDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIVLSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIIIHCLVKLQQYDKAIDIFNSMRRNKSDCRPDVVTFTSIIHLYSTCGQVENCVAAFNMMLAEGLKPNTISYNSLIGAYAARGMDKEALAVFNEIKQNGFWPDIVSYTSLLNAYGRSQKPQKAREIFAMIKKNRLKPNIVTYNALIDAYGSNGLLAEAIEILREMEQDGIYPNVVSICTLLAACGRCSQKVKIDTILSAAEMRGIKLNTVAYNSAIGAYMNVGKYDRAVGLYKSMRKKNIKPDSVTYTVLISGCCNMSKYSEALVFMEEMMHLRLTLSKEVYSSAICAYSKLGQVIEAESTFNLMKSSGCYPDVVAYTAMLDAYNAGENWEKAYALFEEMEVNGIKLDTIACAALMRAFNKGGQPGRVLSLAESMREKDIPFSDTIYFEMVSACSINRSRQKQNAEAKSKSSETTTTRRITPTTMDNEIRATTKAKLEAKAKTETEAAMARSINDRARRRSRNDERRASGGGGTKRGLPLPSDLFLLPCSLSPPSSSPPFPFPFPFPLHRSPLPSPSLSYHLISSHLISAIKKNNNLISQNSILSKQLQTKTIVDLALEELQFLNIPEICYLFFLFAFSLLSTAASVFTVASLYTNKDVSFSSTISAIPKIFKRLFITYLWATLLMFICNFVFVIFLVLLIIAIDTQNSFLQFFTVIVGVLVIVNLVGLLV 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00411 916 SUPERFAMILY TPR-like 135 307 IPR011990 GO:0005515
Aip06g00411 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Aip06g00411 916 Gene3D Tetratricopeptide repeat domain 520 665 IPR011990 GO:0005515
Aip06g00411 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Aip06g00411 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 557 IPR002885 -
Aip06g00411 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Aip06g00411 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Aip06g00411 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Aip06g00411 916 SUPERFAMILY TPR-like 241 585 IPR011990 GO:0005515
Aip06g00411 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Aip06g00411 916 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 74 659 - -
Aip06g00411 916 Pfam Pentatricopeptide repeat domain 336 397 IPR002885 -
Aip06g00411 916 Pfam Pentatricopeptide repeat domain 401 430 IPR002885 -
Aip06g00411 916 Pfam Pentatricopeptide repeat domain 194 253 IPR002885 -
Aip06g00411 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Aip06g00411 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Aip06g00411 916 PANTHER OS07G0213300 PROTEIN 74 659 - -
Aip06g00411 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Aip06g00411 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 136 170 IPR002885 -
Aip06g00411 916 MobiDBLite consensus disorder prediction 644 675 - -
Aip06g00411 916 TIGRFAM PPR: pentatricopeptide repeat domain 526 559 IPR002885 -
Aip06g00411 916 TIGRFAM PPR: pentatricopeptide repeat domain 104 137 IPR002885 -
Aip06g00411 916 TIGRFAM PPR: pentatricopeptide repeat domain 315 348 IPR002885 -
Aip06g00411 916 TIGRFAM PPR: pentatricopeptide repeat domain 139 171 IPR002885 -
Aip06g00411 916 TIGRFAM PPR: pentatricopeptide repeat domain 280 314 IPR002885 -
Aip06g00411 916 TIGRFAM PPR: pentatricopeptide repeat domain 490 517 IPR002885 -
Aip06g00411 916 TIGRFAM PPR: pentatricopeptide repeat domain 385 419 IPR002885 -
Aip06g00411 916 TIGRFAM PPR: pentatricopeptide repeat domain 244 275 IPR002885 -
Aip06g00411 916 TIGRFAM PPR: pentatricopeptide repeat domain 455 489 IPR002885 -
Aip06g00411 916 TIGRFAM PPR: pentatricopeptide repeat domain 208 242 IPR002885 -
Aip06g00411 916 TIGRFAM PPR: pentatricopeptide repeat domain 560 594 IPR002885 -
Aip06g00411 916 TIGRFAM PPR: pentatricopeptide repeat domain 350 384 IPR002885 -
Aip06g00411 916 TIGRFAM PPR: pentatricopeptide repeat domain 174 206 IPR002885 -
Aip06g00411 916 MobiDBLite consensus disorder prediction 644 724 - -
Aip06g00411 916 Pfam PPR repeat family 135 182 IPR002885 -
Aip06g00411 916 Pfam PPR repeat family 453 501 IPR002885 -
Aip06g00411 916 Pfam PPR repeat family 557 604 IPR002885 -
Aip06g00411 916 Pfam PPR repeat family 277 325 IPR002885 -
Aip06g00411 916 MobiDBLite consensus disorder prediction 676 716 - -
Aip06g00411 916 Gene3D Tetratricopeptide repeat domain 271 341 IPR011990 GO:0005515
Aip06g00411 916 Gene3D Tetratricopeptide repeat domain 342 411 IPR011990 GO:0005515
Aip06g00411 916 Gene3D Tetratricopeptide repeat domain 32 199 IPR011990 GO:0005515
Aip06g00411 916 Gene3D Tetratricopeptide repeat domain 412 519 IPR011990 GO:0005515
Aip06g00411 916 Gene3D Tetratricopeptide repeat domain 200 270 IPR011990 GO:0005515
Aip06g00411 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 101 135 IPR002885 -
Aip06g00411 916 Pfam PPR repeat 526 555 IPR002885 -
Aip06g00411 916 Pfam PPR repeat 104 133 IPR002885 -
Aip06g00411 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00411 Aip-Chr6 4832653 4843943 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00411 186 681 Glycosyltransferase AT1G05670 23.246 1.86e-34 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00411 - - ahf:112696020 1239.94