Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00270 ATGGAGTCTTGCTCCACCATGCGCCAGCTGAGGCAGATCCAGGCCCGCATGACCCGCACGGGCCTCATGGGCCACACATTCCCAGCCAGCAGAGCCCTAGCTTTCTGTGCCCTCTCCGACGCCGGAGACGTTCGTTATGCCCACGCTCTCTTTGACCGTATTGAACACCCCAACACCTTTATGTGGAACACCATGATCAGGGGCTATTGCAGGGCCAATGCTCCTGCCATGGCGTTCTCCTTCTTCCTCCGAATGCTTCTCCAACTCTCCAAGATGGACTGCAGAACCTTCGTTTTTTCGCTCAAAGCGTGCGAGCTGTTCTCGGGTTCTGTTGAGGGGGAACTGGTGCACTGTTTGATTCGGAAGACGGGTTTTGATTCTGAGTTGCTAGTGCGAAATGGGTTGGTTCATTTTTATGCTGAACGTAGTTGGCTGAAAAGTGCGCGCCAGGTGTTTGATGAAAGTTCTGAGAGGGATGTTGTTACTTGGACCACAATGATTGACGGCTATGTGGGAAATAAGTCTTCAGATTCGGCTTTGGAATTGTTTGGTTTGATGTTGAGTAGTGGTGTTGAGCCCAATGAGGTGACCTTGATTGCGGTGCTCTCGGCGTGTTCCCAGAACGGTGATCTTGTCATGGGAAGGAGTATCCATGAAGACAACATAGCAAGGAAGAATGTAAGGTATACTTTGAGTTTAAACAATGCATTATTGGACATGTATGTGAAATGTGGTAGTTTGATGGCTGCTAGAGAGCTTTTTGATAAAATGGAGACTAAGGATGTTTTCTCGTGGACTAGTTTGGTTAATGGGTATGCTAAATGTGGTGACTTGGAATCTGCAAGGAGGTTTTTTGATCAAACTCCTCATAAAAACGTGGTCTCATGGAATGCAATGATAGCAGGATATTCTCAGAACAACAAACCCAAAGAATCAATAAAGTTGTTTCGGGAAATGATCGCAGCAGGTATGATTCCCAGCGAGCATACCTTAGTCAGTGTGCTCTCTGCTTGTGGCCAGCTGAGTTGCTTGAATTTGGGACACTGGATTCATCACCATTTTGTCAATGAGAAAAGGGTGCACCTTAGTGTGACTATGGGAAATGCAATTATAGACATGTACGCCAAGTGTGGAAGCATTGATGCAGCAGCAGAAGTCTTTAAAGTAATGCCAGTAAGAAGCCTGATTTCTTGGAATTCCATGATTGCATCCTATGCTGCTCATGGCCGAGCAAAGCAAGCTATCATTGTATTTGATCAGATGGTATCTATGGGATTTAGGCCAGATGATGTTACATTTGTGAGCTTGTTAACAGCTTGCAGCCATGGTGGGTTAGTTTCCGAAGGACAAGAATATTTTGACACCATGGAAACGAAGTATGGGATAAAGCCCAAAAGGGAACACTATTCGTGCATGATTGATCTACTTGGTCGAACAGGGCTTCTTGAAGAAGCTTACAAGTTAATAACGAGTATGCCAATGCAACCTTGTGAAGCTGCTTGGGGTGCGCTTTTAAATGCGTGTAGAATGCATGGGAATGTCGAGCTTGCTAAATTGTCAGCTGGTAACCTTATGAAGTTGAATCCAGAAGACAGTGGAACATATATTCTCCTGGCAAATATCTGTGCCAATGATCGAAACTGGGGCGATGTGAGGAGGGTGCGAAGTTTGATGAGAGACAAAGGTGTGAAGAAGATTGCTGGTCATAGCTTGATAGAGATTGAGGGTGAATTTAAGGAATTTTTGGTTGCTGATGAATCAAACACTCAATCTGAGGAGATCTATAAAGTACTGGATCTAATGTATTTGTTGTCAAAATTGGAAGACTATGACTCTGAGTTATTTATTATAGGCTTCAATGGCTAA 1866 0.4469 MESCSTMRQLRQIQARMTRTGLMGHTFPASRALAFCALSDAGDVRYAHALFDRIEHPNTFMWNTMIRGYCRANAPAMAFSFFLRMLLQLSKMDCRTFVFSLKACELFSGSVEGELVHCLIRKTGFDSELLVRNGLVHFYAERSWLKSARQVFDESSERDVVTWTTMIDGYVGNKSSDSALELFGLMLSSGVEPNEVTLIAVLSACSQNGDLVMGRSIHEDNIARKNVRYTLSLNNALLDMYVKCGSLMAARELFDKMETKDVFSWTSLVNGYAKCGDLESARRFFDQTPHKNVVSWNAMIAGYSQNNKPKESIKLFREMIAAGMIPSEHTLVSVLSACGQLSCLNLGHWIHHHFVNEKRVHLSVTMGNAIIDMYAKCGSIDAAAEVFKVMPVRSLISWNSMIASYAAHGRAKQAIIVFDQMVSMGFRPDDVTFVSLLTACSHGGLVSEGQEYFDTMETKYGIKPKREHYSCMIDLLGRTGLLEEAYKLITSMPMQPCEAAWGALLNACRMHGNVELAKLSAGNLMKLNPEDSGTYILLANICANDRNWGDVRRVRSLMRDKGVKKIAGHSLIEIEGEFKEFLVADESNTQSEEIYKVLDLMYLLSKLEDYDSELFIIGFNG 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00270 621 Pfam PPR repeat 468 493 IPR002885 -
Aip06g00270 621 Pfam PPR repeat 368 392 IPR002885 -
Aip06g00270 621 Pfam PPR repeat 235 261 IPR002885 -
Aip06g00270 621 Pfam PPR repeat 263 287 IPR002885 -
Aip06g00270 621 Pfam PPR repeat family 158 205 IPR002885 -
Aip06g00270 621 Pfam PPR repeat family 395 441 IPR002885 -
Aip06g00270 621 Pfam PPR repeat family 57 104 IPR002885 -
Aip06g00270 621 Pfam PPR repeat family 291 338 IPR002885 -
Aip06g00270 621 Gene3D Tetratricopeptide repeat domain 371 595 IPR011990 GO:0005515
Aip06g00270 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Aip06g00270 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Aip06g00270 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 291 IPR002885 -
Aip06g00270 621 TIGRFAM PPR: pentatricopeptide repeat domain 235 262 IPR002885 -
Aip06g00270 621 TIGRFAM PPR: pentatricopeptide repeat domain 294 327 IPR002885 -
Aip06g00270 621 TIGRFAM PPR: pentatricopeptide repeat domain 396 429 IPR002885 -
Aip06g00270 621 TIGRFAM PPR: pentatricopeptide repeat domain 263 287 IPR002885 -
Aip06g00270 621 TIGRFAM PPR: pentatricopeptide repeat domain 61 86 IPR002885 -
Aip06g00270 621 TIGRFAM PPR: pentatricopeptide repeat domain 161 195 IPR002885 -
Aip06g00270 621 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 267 609 - -
Aip06g00270 621 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 267 609 - -
Aip06g00270 621 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 2 273 - -
Aip06g00270 621 Gene3D Tetratricopeptide repeat domain 10 112 IPR011990 GO:0005515
Aip06g00270 621 Gene3D Tetratricopeptide repeat domain 113 217 IPR011990 GO:0005515
Aip06g00270 621 Gene3D Tetratricopeptide repeat domain 218 345 IPR011990 GO:0005515
Aip06g00270 621 SUPERFAMILY TPR-like 134 286 IPR011990 GO:0005515
Aip06g00270 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 58 88 IPR002885 -
Aip06g00270 621 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 273 - -
Aip06g00270 621 Pfam E motif 511 573 IPR046848 -
Aip06g00270 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00270 Aip-Chr6 3161193 3163058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00270 47 599 Glycoside Hydrolase AT3G49170 33.571 2.98e-94 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00270 - - ccaj:109796361 954.896