Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00192 ATGGAAGAAACAGAAGCAGAAGCAGAAGTAGAATCAAACCGAGACAACGTTGAAGTAGCTCCGGCGCTAATCGCGGTTCACCCGGAACAAACCTCCGTCGCCGTCGCCGTTGGACCCGACCTCCGTGTCTTCGACCTCCTTGCTGGTTCCGCTGCTTCTCTAGTCGACGAGTGCGGTGCACCCTTCCACAAGGACTCAATCAGAGCTATCAGATTTGGCTCCAGAGGGAAGCTCTTCGTGTCCGCCGGCGACGACAAAACTGTCAAGATTTGGTCCACGGAATCGTGGCGCTGCGTCTGCACGGTGTCGTCGGAGAAGAGGGTGAGTGCGGTTGCGATAAGTGAGGACGGTTGCCACGTGTGTTTCGCTGACAAGTTCGGTGTTGTGTGGGTTGTGGACGTGGCTGGGTCCCATGAACACGTGGCATTAGGTGATAGGAAACCGACGCCGCTTCTTTCTCACTATTGCAGTATCATCCCTAGCTTGGAATTTTCCCCTGATGGCAGGTTTATTTTAAGTGCTGATCGGGATTCTAAAATTCGGGTTACTAATTTTCCCAAGAAGCCGTTGAATGGAGCTCACGAGATACAAAGTTTCTGCCTTGGTCATACAGAGTTTGTATCCTGCCTTGCCTTTGTTCATGCTCGGGAATGCCCTCAAGGCCTTCTTGTCTCTGGCAGTGGTGATTCAACGGTTCGATTGTGGGATATCTCCTCTGGGGTGCTCCTAGATACTTGTGAGGTTGCTGCTAAGGCAGGACTTCTAGAGTCTAATGGTGAAGCAGAGGAGCATGGCCATGCTGTTACTGATTTGTGCACCACCATCAGTGGTTTGCTTATTGCTGTGGCCATTCAAAGCTTGCAAGGACTAGTATTGTTGAGCTGTGATGTTTCTGCACAAACACTTTCTGTTTCCAAGGTGGTTTCTATTGCGGGAGAGGCCTTTGTTCCTACCTGCTTGGGGTTCAGCCCCGCCGAAGGGAAATTGTGGATGGTAACTGGTGTTTCTAGTTTACCTGCTTGTAACTACCCGCCGTTGTCTCGCGTGCGAGTAATCTCTGCTATTGATGCTGAGCAAGAGCCAGTAGTTTTGGGAGATGATGAGATACCTGGTGGAGAGAAGCTGCTAGAAACGTTGCAAGGAAGTGCTTCTGTTGATGAGAGTGCTTTCTTGGCTGCAGCTGAAGCTGTCAAAACAGCAATGCGCAACCTATTGATTAAAAAGCAATACCCTGCAGATAATAGAGAATCTAGGAAGAAAACTAGAAATGATAGAAAACTGAAAATGTGA 1290 0.4953 MEETEAEAEVESNRDNVEVAPALIAVHPEQTSVAVAVGPDLRVFDLLAGSAASLVDECGAPFHKDSIRAIRFGSRGKLFVSAGDDKTVKIWSTESWRCVCTVSSEKRVSAVAISEDGCHVCFADKFGVVWVVDVAGSHEHVALGDRKPTPLLSHYCSIIPSLEFSPDGRFILSADRDSKIRVTNFPKKPLNGAHEIQSFCLGHTEFVSCLAFVHARECPQGLLVSGSGDSTVRLWDISSGVLLDTCEVAAKAGLLESNGEAEEHGHAVTDLCTTISGLLIAVAIQSLQGLVLLSCDVSAQTLSVSKVVSIAGEAFVPTCLGFSPAEGKLWMVTGVSSLPACNYPPLSRVRVISAIDAEQEPVVLGDDEIPGGEKLLETLQGSASVDESAFLAAAEAVKTAMRNLLIKKQYPADNRESRKKTRNDRKLKM 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00192 429 Pfam WD domain, G-beta repeat 63 92 IPR001680 GO:0005515
Aip06g00192 429 Pfam WD domain, G-beta repeat 153 182 IPR001680 GO:0005515
Aip06g00192 429 Pfam WD domain, G-beta repeat 200 236 IPR001680 GO:0005515
Aip06g00192 429 ProSitePatterns Trp-Asp (WD) repeats signature. 223 237 IPR019775 -
Aip06g00192 429 SMART WD40_4 51 92 IPR001680 GO:0005515
Aip06g00192 429 SMART WD40_4 192 236 IPR001680 GO:0005515
Aip06g00192 429 SMART WD40_4 145 184 IPR001680 GO:0005515
Aip06g00192 429 SMART WD40_4 95 133 IPR001680 GO:0005515
Aip06g00192 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 240 - -
Aip06g00192 429 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 30 421 IPR028884 GO:0036265
Aip06g00192 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 245 IPR001680 GO:0005515
Aip06g00192 429 SUPERFAMILY WD40 repeat-like 24 333 IPR036322 GO:0005515
Aip06g00192 429 Gene3D - 59 336 IPR015943 GO:0005515
Aip06g00192 429 PANTHER WD40 REPEAT PROTEIN 4 22 426 IPR028884 GO:0036265
Aip06g00192 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Aip06g00192 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00192 Aip-Chr6 1968607 1971160 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00192 63 257 Miscellaneous Gene Families AT5G08390 24.873 2.01e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00192 K15443 - gmx:100786310 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00192 06 1968607 1971160 Aip06g00192 06 1968607 1971160 ECH