Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00112 ATGATATCTCAGTTGTTCGTGCTTTCTCAACGAGGCGATAACATCGTCTTCCGTGACTATCGCCGTGATGTTCACAAAGCGAGCGCCGAGACATTTTTCCGCAAAGTCAAGTTCTGGAACGACGATGGTGAAGAAGATGCTCCACCTGTCTTTAATGTGGATGGAGTGAACTACTTCCATGTGAAGGTTGCCGGGTTGTTGTTTGTTGCTACAAACAGGGTCAATGTATCCCCCTCTCTTGTCTTGGAGCTCTTGCAGCGGATCGCTCGTCTCATCAAGGATTACCTTGGCGTTCTTAATGAAGATTCATTGCGGAAGAATTTCGTGCTTGTCTATGAATTGCTGGATGAAGTCATTGATTTTGGTTATGCACAAACAACTTCCACGGAGCTTTTGAAATCTTATATTTTCAACGAGCCAATTATGATTGATTCTGCAGTGATGCCTCCCCTTGGTGCTGCATCCATTTTTGTGAAAGGGAACAAACGAATGCCAAGCACAGTTATTACAAAGTCTGTTGTTGCTAATGAACCTGGTGGTAGAAAGAGGGAGGAGATTTTTGTTGACGTAATCGAGAAAATAAGTGTCACATTCAACTCTAGCGGATATATACTTACTAGTGAGATAGACGGCACCATTCAAATGAAGAGTTACCTTACGGGTAACCCAGAGATTCGGCTTGCTCTCAATGAGGACCTGAGTATAGGAAGAAGTGATTATGCAAGTTCCACTGCAGTGATTCTAGACGATTGTAACTTCCATGAGTCTGTACACCTTGATAGTTTTGATACTGACCGAACCTTGTCATTGGTTCCACCAGAAGGGGAATTCCCAGTCATGAATTATCGAATGACTCAACCGTTTAAGCCTCCATTTCGTATTAATGCATTGCTTGAAGAAACAGGACCCCTGAAAGCCGAAGTGATAATTAAAGTTTGTGCTGACTTCAACCCAAGTATCAATGCTAACACAGTTCTTGTACAGATGCCAGTGCCAAAATTTACCAATCGAGTTAATTTTGAGTTGGATCGTGAATCAGTTGGGAACACAACTGACTTCAAGGAAGCAAATAAGAGACTAGAGTGGAGCATAAAAAAGGTTGTCGGCGGAGCGGAACATACTTTACGAGCGAAACTAACTTTTTCACAGGAGTTACTTGGCAATATCATGAAGGAGGCAGGGCCTGTTAGCATGACCTTTGATATACCAATGTATCATGCTTCAAGGCTTCAGGTGAAGTATTTGCAAATAGCAAAGAAATCAAAGGCACATAATCCATATAGATGGGTTAGATATGTGACCCAAGCAAACTCATATGTTGCCCGCTTGTAA 1332 0.4234 MISQLFVLSQRGDNIVFRDYRRDVHKASAETFFRKVKFWNDDGEEDAPPVFNVDGVNYFHVKVAGLLFVATNRVNVSPSLVLELLQRIARLIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYAQTTSTELLKSYIFNEPIMIDSAVMPPLGAASIFVKGNKRMPSTVITKSVVANEPGGRKREEIFVDVIEKISVTFNSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGRSDYASSTAVILDDCNFHESVHLDSFDTDRTLSLVPPEGEFPVMNYRMTQPFKPPFRINALLEETGPLKAEVIIKVCADFNPSINANTVLVQMPVPKFTNRVNFELDRESVGNTTDFKEANKRLEWSIKKVVGGAEHTLRAKLTFSQELLGNIMKEAGPVSMTFDIPMYHASRLQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00112 443 PIRSF AP_complex_mu 1 443 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aip06g00112 443 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aip06g00112 443 PRINTS Clathrin coat assembly protein signature 101 128 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aip06g00112 443 PRINTS Clathrin coat assembly protein signature 248 275 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aip06g00112 443 PRINTS Clathrin coat assembly protein signature 361 372 IPR001392 GO:0006886|GO:0016192|GO:0030131
Aip06g00112 443 CDD AP-4_Mu4_Cterm 178 443 - -
Aip06g00112 443 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 2 443 - -
Aip06g00112 443 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 182 442 IPR036168 -
Aip06g00112 443 CDD AP4_Mu_N 3 143 - -
Aip06g00112 443 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Aip06g00112 443 Gene3D Mu homology domain, subdomain B 182 438 - -
Aip06g00112 443 PANTHER AP COMPLEX SUBUNIT MU 2 443 - -
Aip06g00112 443 ProSiteProfiles Mu homology domain (MHD) profile. 183 442 IPR028565 -
Aip06g00112 443 Gene3D - 1 142 - -
Aip06g00112 443 Pfam Adaptor complexes medium subunit family 182 442 IPR028565 -
Aip06g00112 443 Gene3D Mu homology domain, subdomain B 290 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00112 Aip-Chr6 1056403 1061033 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00112 K12402 - gmx:100800985 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00112 06 1056403 1061033 Aip06g00112 06 1056403 1061033 ECH