Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00041 ATGATTGTTGCAGATGGAATCGACGATGAAGAGAAGTGGCTGGCGGAGGGCATCGCCGGCGTTCAACATCACGCTTTCTTCATGCACCGCGCCCTCGACGACAACAATCTCAGGGACGCTTTAAAATACTCCTCGCTAATGCTTTCCGAGCTTCGAACTTCGAGGCTCTCCCCTCACAAATACTATGAACTGTATATGAGAGCGTTCGACGAGCTTAGGAGGTTGGAATTGTTCTTCAAAGACGAGAGCAGGCATGGCGTTTCCATTTTTGATCTCTACGAGCTTGTTCAGCACGCTGGAAATGTATTGCCTAGATTGTATCTCCTTTGCACAGTGGGGTCGGTGTACCTCAGGTGTAAGGATGCTCCTGTGAAGGATGTTCTTAAGGATCTGGTGGAAATGTGCCATGCAGTTCTGCACCCAATTCGCGGCCTGTTTTTGAGGAGTTACCTTGCTCAAATCAGCAAGGATAAGTTACCCGATATTGGCTCTGAATATGATGGAGAAGGGGATTCGGGCAATGTCATGGATGCTGTTGAATTTATCCTACAAAATTTCATGGAAATGAATAAGCTTTGGGTTCGATTGCAACATCAGGGACCTGGTCGGATAAGAGACAAGAGGGAGAAAGAAAGAAATGAGCTTCGCGATCTTGTTGGAAAGAATCTTCACATTCTCAGTCAGATAGAGGGTGTGGACCTTGAAATGTACAAAGACACTGTCCTTCCGAGTGTCTTAGAGCAGGTTGTCAATTGTAAAGATGAGCTTGCCCAATTTTACCTCATGGAGTGCATAATCCAAGTTTTCCCAGATGAGTACCACTTGCAGACTCTTGAGACACTTCTTGGTGCTTACCCCCAACTGCAGTCAACAGTAGACATCAAGACCATACTATCTCAGTTAATGGACAGGTTATCAAATTATGCTGCTTCAAATGCTGAAGTGCTGCCCGAATTTCTGCAAGTGGAAGCTTTTACCAAACTAAGCACAGCAATAGGCAGGGTGATAGAAGCACAGGCTGACATACCTATTGTTGGAGCAATATCTTTGCATGTCTCTCTTCTGACATTCACTCTCCGTGTTCATCCTGATCGGCTTGATTATGTGGACCAAGTGCTGGGATCATGTGTCAAGAAGCTTTCTGGAAAACCAAAGCTTGATAATAGAGCAACGAAGCAAGTTGTTGCACTTTTAAGTGCTCCACTGGATAAATACAATGATATTGTGACAGCCCTTAGACTTTCTAATTATCCGCGTGTAATGGATCATCTTGATAACCAAACAAATAAAGTGATGGCTATGCTTATTATCCAAAGTATTATGAAGAATAACACTCTCATATCTACTGCTGATAAGGTTGAAGTTTTATTTGAATTAATAAAAGGGCTTATTACAGATTTGGATGCCACAACTGTGGATGAGGTTGATGAAGAAGATTTCAGCGAAGAACAAAATTCTGTTGCTCGGCTCATACACATGCTTCATAACAATGATCCAGAGGAAATGTTTAAGATAATATGTAGTGTAAAGAAGCACATTATGAGAGGAGGACCAAGGCGTTTACCTTTCACAGTTCCTTCCCTTATTTTTTCTGCACTTAGGTTGGTCAGGCAATTACAAGGACAAGATGGAGATGTTGTGGGTGAAGAAGTTCCAACGACACCAAAAAAGATATTTCAGCTTTTAAATGAGATCATTGAAGCCCTTTCTTCTGTATCATCTCCCGAACTGGCCTTGAGATTGTACCTGCAATGTGCTGAGGCTGCTAATGACTGTGACCTTGAGCCTGTTGCATATGAGTTTTTCACCGAAGCATTTGTGTTATATGAAGAAGAAATTGCGGACTCTAAAGCCCAGGTAACTGCAATACATCTTATTATTGGGACACTTCAGAGGATGAACGTCTTTGGAGTCGAGAACAGGGATACGTTAACTCATAAGGCCACAGGGTATTCGGCAAAGCTTTTGAAGAAACCTGATCAGTGCCGAGCAGTTTATGCGTGCTCACATCTCTTCTGGGTCGATGATCAAGATGGTATTAAAGATGGAGAGAGGGTATTGCTTTGCCTTAAGCGTGCATTGAGGATCGCAAATGCTGCGCAGCAAATGGCCAATGTAGCAAGGGGTAGCAGTGGTCCAGTAACGCTATTTGTTGAAATACTAAACAAGTTGGTCACCTGTGCTATAAAAACTAGGAAGCTTAGTTAG 2208 0.4307 MIVADGIDDEEKWLAEGIAGVQHHAFFMHRALDDNNLRDALKYSSLMLSELRTSRLSPHKYYELYMRAFDELRRLELFFKDESRHGVSIFDLYELVQHAGNVLPRLYLLCTVGSVYLRCKDAPVKDVLKDLVEMCHAVLHPIRGLFLRSYLAQISKDKLPDIGSEYDGEGDSGNVMDAVEFILQNFMEMNKLWVRLQHQGPGRIRDKREKERNELRDLVGKNLHILSQIEGVDLEMYKDTVLPSVLEQVVNCKDELAQFYLMECIIQVFPDEYHLQTLETLLGAYPQLQSTVDIKTILSQLMDRLSNYAASNAEVLPEFLQVEAFTKLSTAIGRVIEAQADIPIVGAISLHVSLLTFTLRVHPDRLDYVDQVLGSCVKKLSGKPKLDNRATKQVVALLSAPLDKYNDIVTALRLSNYPRVMDHLDNQTNKVMAMLIIQSIMKNNTLISTADKVEVLFELIKGLITDLDATTVDEVDEEDFSEEQNSVARLIHMLHNNDPEEMFKIICSVKKHIMRGGPRRLPFTVPSLIFSALRLVRQLQGQDGDVVGEEVPTTPKKIFQLLNEIIEALSSVSSPELALRLYLQCAEAANDCDLEPVAYEFFTEAFVLYEEEIADSKAQVTAIHLIIGTLQRMNVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVTLFVEILNKLVTCAIKTRKLS 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00041 735 PANTHER VACUOLAR SORTING PROTEIN 35 3 725 IPR005378 GO:0015031|GO:0030906|GO:0042147
Aip06g00041 735 Pfam Vacuolar protein sorting-associated protein 35 13 726 IPR005378 GO:0015031|GO:0030906|GO:0042147
Aip06g00041 735 Gene3D - 468 733 IPR042491 -
Aip06g00041 735 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 3 725 - -
Aip06g00041 735 PIRSF Retromer_Vps35 3 729 IPR005378 GO:0015031|GO:0030906|GO:0042147
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00041 Aip-Chr6 329220 335002 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00041 K18468 - gmx:100775573 1294.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00041 06 329220 335002 Aip06g00041 06 329220 335002 ECH