Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00040 ATGATGCGGGTTTCAGACGTTGGAGTTGAATCTCGGGTGAAGCTCATTGACGCCCACCGTGGAGTTTTGTTTTTGTTTTCGTTTTCGCGGAATTACGTCAAGGAGATTACACCTCCACTCCATACTATCAATTCCCTCATCTCCCAAATTCCAATCCCAATCCCAACCCTAACCCTAATTCCGATCCACACTCAGCCCCTTACGCATCCGCACCACCCTTCTCCTCCGGTTACGCTCCCTCCGATTACACCTCTTACTACCAATTTCCCTTCCTTCAATTCTCCATCCTTTGACTCTCACCTCTCGTACCAACAACCACCGCCACATCAGCATCAACCACCACCACAACAGCAACCTTATTATCCACCTTTCGATCAGCATCAAGCGGCTCCATCTCCGATCTACGCTCCTCCTCCACCACCACCACCCTCCGTTACGCCACCGTACTCCGCACCGTATAGCCACGCTGGATCTACGGTCCCTCCAGCTCCCTCCGCATACGATCCACCCTACGATAACAGTCCCGCCAAGTTCGATCACTCTGGCGCTTTCTTTGACGACGGCTACAACAACTTTAACCGTAGTAACCGTTCCGATTCGTATGGTAACCGACACGATGACGGTTTCAGCGGGTTTAACCGTGGTAATCATCGTTCTGATTACCGCGAGGAGGTGTACGGGGATGGCGTGTACGCTTACGAAGGAGGGAAGGTGGAACCGTACGGGTCTCGTGGAACCGCACCAAAATCGTCGACTTGGTCCGGTTTCGATGATTACGGGAGAGCGATCAGTCTTCCAACGGCCGCAAAGGAACCTTCCGGTGGAAGCAAGATTGTGAAGGCAGTGCCGAAGGTGGAGACGCGAGAGGATCCCGGAAGCGGGGTGCAGAAGTTCCGGGTGAAGCTCTTGGCGGAGAGTGGTGGCCAGAGCACCATGGATGTTCTGTGTCAGATTGGTTTGGATGGAATTCGAATGCTGGAACCAAATACTAGTCGAACATTGAGAATATATCCTCTTGAGAACATAACAAGATGTGAGAGGTTTGATTCATCTACCCTTGCATTCTGGTCAAAGAGCCCAGTGGACATTGAGCCACGACGAATCAGATTGCAATCCAATAGTTACACTACCAACACACTTTTGGATACTGTGACTGCTGCCACCATACAGTACAAGGAAATGGGTGGAAGCAAAAGACCCACAGAATCGTTAAGAACTAATGAACAGCCTGCAGAAAAAAGGAAAGGATTTGGTGATTGGATGAATTTGATTAAACCTCCCAATGAAGAGAAGGATCATTGGGTCCCAGATGAAGCAGTCTCGAAATGTACAGCATGTGGCACTGATTTTGGAGCTTTCAATCGCAGGCATCACTGTAGAAATTGTGGAGATATTTTCTGTGATAAATGTACACATGGTAGAATTGCTCTAACTGCTGACGAGAATGCTCAACCAGTACGTGTTTGTGACCGATGCATGGCAGAAGTGACTCAGAGACTGAGTAATGCTAAAGAAGCAGCAAATAAACCAGTGTTGCAAAGTCATGAGGATCTTGCCAGGAAACTTCAGGTATATAGTAGTGCATGCCTGCTCTGGTTCACAGGTTCCAAGTCTGAAGGATCTGGAAGACGGATGAAGGAAGTTGCATGTCCTATTTGCACTGTCCATCTGCAGGTCCAGGTACCCAGCTCAGGTTCAGAGACCATAGAGTGTGGAGTTTGCCAGCACCCATTTCTTGTGAGTGCTCATTGA 1752 0.4914 MMRVSDVGVESRVKLIDAHRGVLFLFSFSRNYVKEITPPLHTINSLISQIPIPIPTLTLIPIHTQPLTHPHHPSPPVTLPPITPLTTNFPSFNSPSFDSHLSYQQPPPHQHQPPPQQQPYYPPFDQHQAAPSPIYAPPPPPPPSVTPPYSAPYSHAGSTVPPAPSAYDPPYDNSPAKFDHSGAFFDDGYNNFNRSNRSDSYGNRHDDGFSGFNRGNHRSDYREEVYGDGVYAYEGGKVEPYGSRGTAPKSSTWSGFDDYGRAISLPTAAKEPSGGSKIVKAVPKVETREDPGSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLEPNTSRTLRIYPLENITRCERFDSSTLAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVTAATIQYKEMGGSKRPTESLRTNEQPAEKRKGFGDWMNLIKPPNEEKDHWVPDEAVSKCTACGTDFGAFNRRHHCRNCGDIFCDKCTHGRIALTADENAQPVRVCDRCMAEVTQRLSNAKEAANKPVLQSHEDLARKLQVYSSACLLWFTGSKSEGSGRRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSAH 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00040 583 MobiDBLite consensus disorder prediction 107 121 - -
Aip06g00040 583 Pfam FYVE zinc finger 433 497 IPR000306 GO:0046872
Aip06g00040 583 MobiDBLite consensus disorder prediction 132 149 - -
Aip06g00040 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 502 IPR013083 -
Aip06g00040 583 SMART fyve_4 429 498 IPR000306 GO:0046872
Aip06g00040 583 MobiDBLite consensus disorder prediction 96 179 - -
Aip06g00040 583 CDD PTB 279 345 - -
Aip06g00040 583 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 437 497 IPR017455 -
Aip06g00040 583 SUPERFAMILY FYVE/PHD zinc finger 432 503 IPR011011 -
Aip06g00040 583 PANTHER PROTEIN FREE1 70 583 IPR045893 GO:0036258|GO:0043130
Aip06g00040 583 PANTHER PROTEIN FREE1 70 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00040 Aip-Chr6 324107 329288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00040 415 510 EF-hand Containing Proteins AT3G14270 33.043 1.27e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00040 - - pvy:116123863 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00040 06 324107 329288 Aip06g00040 06 324107 329288 ECH