Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00014 ATGGCGTTTCTGTCGTCCTCAGCTTCAAACTTGCTGGGAACCAAAGTCCTAATATCGCCCCCAACTCCGAAAACAACGAAATTGAGCTCCGCAAGAACAAGCAAGCTCATCAACGCACAAAACCTGCCACAGCAACCACAACCACAATGGAAGAAATCACTGCCTGCTCTCACCGCCCTCTTCATCTCCTCCCTATCCCCACAACCACAAGCCATCGCCGTAGACAACGCAGGGCCCCCAACCGTCATCGAGGCCCAGCAGCCCAGCACCCAGAATCCCTCTCCATTCTCTCAGAACCTTCTCCTCAACGCCCCCAAACCCCAGGCCCAGGCCTCGTCGGACCTCCCCGAGGGCTCCCAGTGGCGTTACAGCGAGTTCCTCAACGTCGTCAAGAAGGGCAAGGTCGAGAGGGTCAGGTTCAGCAAGGACGGCTCCGCCCTCCAGCTCACCGCCGTCGACGGCCGCCGCGCCACCGTCATCGTCCCCAACGATCCCGATCTCATCGACATCCTCGCTATGAACGGCGTCGACATCTCCGTCTCCGAGGGCGACTCCGGCAACGGCCTCTTCAACTTCATTGGCAACCTCCTCTTCCCCTTCCTAGCCTTCGCAGGCCTCTTCCTCCTCTTCCGTAGGGCCCAGGGTGGCCCCGGGGGCCCAGGCGGCCTCGGAGGCCCCATGGACTTCGGCCGCTCAAAGTCCAAGTTCCAGGAGGTCCCCGAAACCGGCGTCACCTTCGCTGACGTCGCAGGCGCTGACCAAGCCAAGCTGGAATTGCAGGAAGTTGTTGATTTTCTCAAGAACCCTGACAAGTACACCGCTTTGGGTGCTAAGATCCCAAAAGGGTGTCTTCTGGTGGGGCCACCTGGAACCGGGAAGACCCTTCTGGCTCGGGCGGTTGCCGGTGAGGCCGGAGTACCGTTCTTCTCTTGCGCGGCTTCGGAGTTCGTGGAGCTGTTTGTTGGGGTTGGTGCTTCCCGCGTGAGGGATTTGTTTGAGAAAGCCAAGTCAAAGGCGCCGTGCATTGTTTTCATTGATGAGATTGATGCCGTGGGGAGGCAGAGAGGGGCTGGTCTCGGAGGCGGGAACGATGAGAGGGAGCAGACCATTAACCAGCTCTTGACGGAGATGGATGGCTTCTCTGGTAATTCCGGTGTCATTGTTTTGGCTGCTACCAACAGGCCCGATGTCCTCGACTCTGCCCTGCTGCGGCCCGGCAGGTTCGATAGGCAGGTTACTGTTGACAGGCCTGATGTTGCTGGCAGAGTTAAGATCCTTCAGGTACATTCTAGAGGAAAGGCACTTGCAAAGGATGTTGACTTTGAAAAGATTGCAAGAAGAACCCCAGGATTCACCGGGGCCGACTTGCAGAATCTGATGAATGAAGCAGCTATTCTTGCAGCAAGGCGTGACCTTAAGGAAATAAGTAAAGATGAGATATCTGATGCCCTTGAGAGGATCATTGCTGGACCAGAAAAGAAAAATGCAGTTGTTTCAGATGAGAAGAAGAAATTAGTAGCCTACCATGAGGCTGGCCATGCTCTAGTGGGTGCTTTGATGCCCGAATATGATCCCGTGGCGAAGATTTCAATCATTCCTCGCGGCCAAGCTGGTGGTCTCACATTTTTTGCTCCCAGTGAAGAGAGGCTTGAGTCTGGACTGTACAGTAGAAGCTACTTGGAAAATCAGATGGCAGTTGCTCTAGGAGGAAGGGTTGCAGAAGAGGTAATATTCGGGGAGGAAAATGTGACGACGGGAGCTTCAAATGACTTCATGCAAGTTTCAAGGGTGGCAAGGCAGATGGTTGAGAGATTCGGGTTCAGCAAGAAGATTGGACAAGTTGCTATTGGCGGCCCTGGTGGTAATCCATTCTTGGGCCAACAGATGTCAACGCAAAAGGATTACTCCATGGCAACTGCCGATGTTGTGGATGCAGAGGTGAGGGAGCTAGTGGAAACAGCCTATTCGAGGGCTAAGCAAATCATAACCACCCACATCGACATCCTTCACAAGCTTGCCCAGCTTCTCATTGAAAAGGAAACCGTCGATGGCGAAGAGTTCATGAGCCTCTTCATTGATGGCCAAGCTGAGCTTTATGTTGCCTAA 2106 0.5446 MAFLSSSASNLLGTKVLISPPTPKTTKLSSARTSKLINAQNLPQQPQPQWKKSLPALTALFISSLSPQPQAIAVDNAGPPTVIEAQQPSTQNPSPFSQNLLLNAPKPQAQASSDLPEGSQWRYSEFLNVVKKGKVERVRFSKDGSALQLTAVDGRRATVIVPNDPDLIDILAMNGVDISVSEGDSGNGLFNFIGNLLFPFLAFAGLFLLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSTQKDYSMATADVVDAEVRELVETAYSRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGQAELYVA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00014 701 Gene3D - 115 186 - -
Aip06g00014 701 CDD AAA 250 415 - -
Aip06g00014 701 SMART AAA_5 279 418 IPR003593 -
Aip06g00014 701 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 190 690 IPR005936 GO:0004176|GO:0004222|GO:0016020
Aip06g00014 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 487 IPR027417 -
Aip06g00014 701 Gene3D - 234 416 IPR027417 -
Aip06g00014 701 Gene3D - 417 492 - -
Aip06g00014 701 Gene3D Peptidase M41 493 696 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aip06g00014 701 PANTHER METALLOPROTEASE M41 FTSH 48 693 - -
Aip06g00014 701 Pfam Peptidase family M41 497 690 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aip06g00014 701 Pfam AAA+ lid domain 438 481 IPR041569 -
Aip06g00014 701 SUPERFAMILY FtsH protease domain-like 497 691 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aip06g00014 701 MobiDBLite consensus disorder prediction 81 101 - -
Aip06g00014 701 ProSitePatterns AAA-protein family signature. 386 404 IPR003960 GO:0005524|GO:0016887
Aip06g00014 701 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 48 693 - -
Aip06g00014 701 Pfam ATPase family associated with various cellular activities (AAA) 284 415 IPR003959 GO:0005524|GO:0016887
Aip06g00014 701 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 701 IPR005936 GO:0004176|GO:0004222|GO:0016020
Aip06g00014 701 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00014 Aip-Chr6 137693 142853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00014 239 692 Miscellaneous Gene Families AT5G53170 49.670 1.28e-136 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00014 K03798 - qsu:111999978 1172.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00014 06 137693 142853 Aip06g00014 06 137693 142853 ECH