Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00008 ATGCAGCTGGCTCTGAGGAATTTGAGGGCGCTCATAGGAGGGGCGACTGAGCCGGCTTGGTTGGGTGAAATCGAAGAGGGTCTTGAACGTCCCGCATTCCGTTGGTTGGAGGGTCACAACATGGGCCTTGTCGGGGGCCCCAGAAAAACAAAAATGCAAGAAAGCCAGTACTTGAGTCTTCGCTTTACCAGTCTGATAACATTGAAGGAAACCCTAGGTTCAGTCTGGAGCACCGGCGTCGCTGGCCTTGCTACTGCCGCTGGTGGTGACGCGCGGGATCCGCCTGTGGTCGTAGTTGTCCGACATGGTGAAGGTGCTGGCCGACTGCGCCAATCGTCGGTTTGTCGTGGCAGGGTTGGAGTAAGGGTGCCTGGATTCCTCATCCTGAAGTGTATGATGTCGTGCAAAGCGGAAGTAAAGGAGAAAATGAACTCTGCAGCAAAACCTAACCGCAGGAATGGCAATCATCTCCCGAAGAATGTGTACCACATCGGAGGCCTGCAGGTGGAGTTTCCGTACCAACCGTACGGGTCCCAGTTTGCATTCATGGGGAGAGTGATCTCCACCCTCGACCGGGCTCAGAGGGAAGGCCACTGCCACGCCTTGCTCGAGTCTCCAACTGGCACCGGCAAGTCCCTCTCCCTCCTCTGTTCCTCTCTCGCCTGGCAGCACCGTTACAAATCCCAACCCAAGCCCCCTCCGCCTTCCGAGCCCCTTGCCGATCCTCTCGTCCACGGCGGCGGCTTTCTTCCCGAGGATGATGCCTTTTCTTCTCCATCCGATAATCCGGAGCTCGCAGAAGCCGAACCAGCCAAAAAAATTCAGAAGAAAAAGGCCGCTCCTACTATATATTATGCCTCGAGAACTCACTCACAAATCTCTCAAGTCATTCGTGAACTGCGGAAAACTACATACAGGGTGCCGATGGCTGTATTGGCATCACGGAAACATTACTGCACCAATAAAAATATACTTGGCAAAGAGAACATCAATGAAGAATGTAAACTACTTCTGAAAGACCAGGAGATAGGGTGTCCAGAATTCAAAAATGCACATAAAGTCAAAGGACATCCCTCTCTTCAGAAAGGAGGATGTAATGAGGTGCATGACATAGAAGATCTTATAAAAGTTGGACATTCAGTGAAAGGTTGCTCCTATTATGCTGCACGTAATATGTCAGATGATGCGCAGCTGGTATTTTGTCCTTATAGCTACATCATTAATCCTGTCATTCGGGGAGCAATGGACTTAGATATTAAAGGAGCTATACTGATTCTTGATGAAGCTCACAATATAGAGGACATCACTCGAGATGCTGGCAGCGTGGATATTCAAGAGGATGATTTTGATAAACTGCAAATGGAGCTCCAGCAACTATGTTCTGTAAATGCTGCAATATACCAACCACTATATGAAATGGCACAGGGTCTTACTAGTTGGATAGAACGGAAGAAAAATAACCTAGACAAGCGTGATTTTCAGCACTATGTGTCATGTTGGACTGGTGACAAGGCATTGAGAGAACTTGAAGAAGCAAATATATCAAAACAGTGCTTCCCAATCTTACTAGAATGTGCTACTAAGGCAATCAGAATTGCTACGGACTTGGAGACAGATAAGCCACATTTAAGTGGCATGTCAGTGATAACATTGGAAGGTTTATTCTCATCACTAACTTATTTCTTCTCAAGAAACGGATCTCACATGTTGGATTACCAGCTTGCTCTGCAGCGATGTGTTAGAAAAGATGCTGGTAAAGCTTTTGGAAACTGGACACACACTTTCAGCTTGTGGTGCTTGAATCCAGCTGTTGTGTTTAGAGATGTTGCTGATCTTTCTTTATCGATTATCTTGACTTCTGGGACTCTATCGCCGATGAGTTCCTTTTCTTCTGAGCTTGGAGTTCAGTTTGAAACTAATCTTGAAGCCCCCCATGTAATTGACATTTGCACACAGGTGTGGCCTGCTGTAATCTCCACTGGTCCTGGTAATTATCCTTTGAATGCAAGTTATAAAACGGCAGATGGATATGCCTTTCAGGATGCAGTTGGAAGATCTTTAGAAGAAATCTTCAACATTGTTCCAGGTGGATGTCTTGTGTTCTTCCCAAGTTATAAATTGATGGAGAAATTATGCAACCGTTGGACTGAAACAGGTCAATGGTCTCGACTAAATGCAAAAAAGCCCCTTTATGTTGAACCACGAGCTGGAGGCCAAGATGATTTTGAGACTACCTTAAAAGGGTATTATGACTCGATTCATCATGGGAAAAAGCTTGGTGCGCGAAGGAAAAGAAGGATTAAAGAAGTTGATTCAAATCACTCCCATCCGGTTGATTCCCAAGAGGGTTTTGAGAAAGGAGGAGCTGCTTTACTTGGTGTTTGCCGTGGAAAGGTTTCCGAAGGGATTGATTTCTCTGATGATAATGCCAGAGTAGTTGTATCCTTATCTATACTTGTAAACTTACTATACTTTATTCTCTTTATTTTGGTCATCAACGTGAAAATAAGATATAAAATAAATGATATTCAAGTTTCTCTAAAGAAAAAATATAATGATATGTACAAATCATCCAAAAATCTTCTCAGCGGAAGTGAGTGGTATTGTCACCAAGCATTCCGTGCTTTAAATCAAGCAGCAGGGCGTTGTATACGACATAAGCTTGACTATGGGGCAATAATCCTTTTGGATGAACGTCTTCGTGAAGAAAGAAGTAGAGCATTCATTTCGAAGTGGCTAAGAAGAAACCTAAAGGTTTATGACAACTTCGAATTATCAATAGAAGGACTAAAATCATTCTTTGAGGATGCCAAGGAATGGCATGCAATGAATACAGTGAATGTCAAACAGAATTTGAGCTTACATACCGATGGTGTCAATATCAAGGGTCAGAATAAGAGATTCACAAGAAAGAAAAATCAGAAACTTAACAAATCTTGCAATGGATTTGAGAAAGAAGGGTCAATTATTGAGGACCATGGCTCTTTTCCTGTACTAAGCTGTCAAGATCTTGTTGACAGTCAACCATCAGCTCAAGGGAATAGTAACAAATACAATTGTGAAGACCATATAAACCCACAAATCTGTAATCTGACGGAGGAAAGGTTCAATCGGGACTTATTTGTTGCATCCACGCTTGGAGAATGCTCCTCCATCAAGGAAACCCCTTGTATAGATGTTAACAGTGATCCAGGTAGCCCTGGTTTCTCTAAGGATGATAACTCTGTTTCCACCATAATTGAGGCCTCTGCTCAATTTTCAAATCACTTATCAAGCTTATCAGTGTGTTTACCTGATGGAAGTAAAAATTCCTCAGGGCTTCACTCTTCAGTAACTGTTACTCCTGAAAAGAATATAGCTAGAAATAATGTTCCTGAAACAGAATCACCTGTGAATACAAGTGTTAATTCTCACTACCAGAAAAGGAGGAAGACCATGCTCTCACCATTTATCACAGAGGTAGAAAATTTAAATTATATTACACCTTGTGCCAACACTCTTATGACATACACAAAAAGCTCATTGGATGTTAGAGAGGAAGCTCATGGAATTGAACATGTTTGGGAGAGAAATTCGAAGTCAAATATTCCTGAGTTACCAACAAGTAGTCTACCTGGTTCATGTTCGTTAACTTTCCCTTTACGGGATAGAAGGTTACAACTTTTTTGTTTACTCTGCAAAAACCCATTGGGCCGACCTGAAAATGATCTGTATCTCATGTGTTCCTTGATTTCCTCATCAAAAGTCCACTTAAGAACCCTTTTGAAACAGAGAACGAAAGCTTATGCTACTGATACATCAAATAGTATACCCGTTATTTTAACCGATTCTTCATTTGTTGATCAACGTATCCGCAATAGAATACCTGGCAGTGCACTGGAACAGGGTATTTGGTGTGTGGAAGATGGGTGTGTCTTCAGCTCTGTTCTCTGCCCCTTCTGCAGTGACCGCAACAATTTACTAGGAGTTCAGATCATTGCAACCAATTCATCAAATATTCAGTTACTTGAAAAGATACTGTTTTACTATGATTCTTTAGAGGTGAAGAGCTATGAGGAATCAGCGTCTGGTGTTTCCAAGGATGTGGATTTGAAGCCAGTTAATGTGAATGATCGAGGCATGAATGGAATTGCTGTGTTAAGTTCCATTGACAAGTATTCTTATGTTCCCCGGCCAAAGATTTCAGAAAGACTAAGGGGCTTGCCTTCTGAGGAAAACCAAAGTTGA 4227 0.4277 MQLALRNLRALIGGATEPAWLGEIEEGLERPAFRWLEGHNMGLVGGPRKTKMQESQYLSLRFTSLITLKETLGSVWSTGVAGLATAAGGDARDPPVVVVVRHGEGAGRLRQSSVCRGRVGVRVPGFLILKCMMSCKAEVKEKMNSAAKPNRRNGNHLPKNVYHIGGLQVEFPYQPYGSQFAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSSLAWQHRYKSQPKPPPPSEPLADPLVHGGGFLPEDDAFSSPSDNPELAEAEPAKKIQKKKAAPTIYYASRTHSQISQVIRELRKTTYRVPMAVLASRKHYCTNKNILGKENINEECKLLLKDQEIGCPEFKNAHKVKGHPSLQKGGCNEVHDIEDLIKVGHSVKGCSYYAARNMSDDAQLVFCPYSYIINPVIRGAMDLDIKGAILILDEAHNIEDITRDAGSVDIQEDDFDKLQMELQQLCSVNAAIYQPLYEMAQGLTSWIERKKNNLDKRDFQHYVSCWTGDKALRELEEANISKQCFPILLECATKAIRIATDLETDKPHLSGMSVITLEGLFSSLTYFFSRNGSHMLDYQLALQRCVRKDAGKAFGNWTHTFSLWCLNPAVVFRDVADLSLSIILTSGTLSPMSSFSSELGVQFETNLEAPHVIDICTQVWPAVISTGPGNYPLNASYKTADGYAFQDAVGRSLEEIFNIVPGGCLVFFPSYKLMEKLCNRWTETGQWSRLNAKKPLYVEPRAGGQDDFETTLKGYYDSIHHGKKLGARRKRRIKEVDSNHSHPVDSQEGFEKGGAALLGVCRGKVSEGIDFSDDNARVVVSLSILVNLLYFILFILVINVKIRYKINDIQVSLKKKYNDMYKSSKNLLSGSEWYCHQAFRALNQAAGRCIRHKLDYGAIILLDERLREERSRAFISKWLRRNLKVYDNFELSIEGLKSFFEDAKEWHAMNTVNVKQNLSLHTDGVNIKGQNKRFTRKKNQKLNKSCNGFEKEGSIIEDHGSFPVLSCQDLVDSQPSAQGNSNKYNCEDHINPQICNLTEERFNRDLFVASTLGECSSIKETPCIDVNSDPGSPGFSKDDNSVSTIIEASAQFSNHLSSLSVCLPDGSKNSSGLHSSVTVTPEKNIARNNVPETESPVNTSVNSHYQKRRKTMLSPFITEVENLNYITPCANTLMTYTKSSLDVREEAHGIEHVWERNSKSNIPELPTSSLPGSCSLTFPLRDRRLQLFCLLCKNPLGRPENDLYLMCSLISSSKVHLRTLLKQRTKAYATDTSNSIPVILTDSSFVDQRIRNRIPGSALEQGIWCVEDGCVFSSVLCPFCSDRNNLLGVQIIATNSSNIQLLEKILFYYDSLEVKSYEESASGVSKDVDLKPVNVNDRGMNGIAVLSSIDKYSYVPRPKISERLRGLPSEENQS 1408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00008 1408 MobiDBLite consensus disorder prediction 250 274 - -
Aip06g00008 1408 SMART deadxpd 167 491 IPR006554 GO:0003678|GO:0016818
Aip06g00008 1408 Pfam DEAD_2 285 448 IPR010614 GO:0003677|GO:0003678|GO:0005524
Aip06g00008 1408 Gene3D - 664 927 IPR027417 -
Aip06g00008 1408 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 158 1268 IPR045028 -
Aip06g00008 1408 Coils Coil 1406 1408 - -
Aip06g00008 1408 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 165 499 IPR014013 GO:0005524
Aip06g00008 1408 Gene3D - 175 484 IPR027417 -
Aip06g00008 1408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 896 IPR027417 -
Aip06g00008 1408 PANTHER FANCONI ANEMIA GROUP J PROTEIN 158 1268 - -
Aip06g00008 1408 SMART Cxpdneu3 705 902 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Aip06g00008 1408 CDD SF2_C_XPD 652 899 - -
Aip06g00008 1408 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 422 431 IPR002464 -
Aip06g00008 1408 Pfam Helicase C-terminal domain 830 915 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Aip06g00008 1408 Pfam Helicase C-terminal domain 687 815 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00008 Aip-Chr6 62393 75845 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00008 K15362 - gmx:100779610 1792.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00008 06 62393 75845 Aip06g00008 06 62393 75845 ECH