Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03999 ATGGCTGAACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCATGAGATATCTGAAAATGATTTACTTCAGCTATTTCAGCCTTTTGGAGTCATCACAAAGCTTGTTATGTTGCGTGCTAAAAATCAGGCTCTTCTCCAAATGCAAGATGTTCCGTCCGCAATTAGTGCTTTACAATTTTATGCAAATGTTCAGCCTAGCATTAGGGGGAGAAATGTTTATGTCCAGTTTTCCTCACATCAAGAACTAACTACAATGGATCAAAATCAAGGACGTGAAGATGAGCCAAATCGAATTCTCTTAGTTACAATTCACCACATGCTGTATCCTATAACTGTGGATGTGCTACATCAAGTGTTTTCCCCCCATGGATATGTTGAAAAGATTGTAACGTTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAATCACGTCAAAGTGCTGTTACCGCTAGAAGTACACTTCAGGGACGCAACATATATGATGGTTGCTGTCAACTGGACATTCAGTTCTCGAACCTTGATGAATTACAAGTGAACTACAACAATGATCGATCAAGGGACTTCACAAACCCAAATCTTCCAACGGAGCAGAAAGGCCGATCTTCACAACCTGGCTATGGTGATGCAGGAAGCATGTATGGTGTTCAAGGTTCTGGAGGTAGAGGAGCTGGAGGATATTCACAGATGGCCAATGCTGCAGCAATTGCAGCTGCCTTTGGGGGAGGCTTGCCTCCTGGGATAACCGGAACAAACGACAGGTGTACAATTCTTGTTGCAAATCTCAATCCTGATAGAATAGATGAAGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTGTCAGAATCAAACTTCTTAGGAACAAACCAGATCATGCGCTTATCCAAATGGGGGATGGTTTCCAAGCCGAATTGGCAGTACATTTTCTTAAGGGAGCTATGTTGTTCGGGAAGCGATTGGAGGTCAACTTCTCGAAGCATCCGAATATAACCCAAGGTGCCGAAACACACGAGTATGTGAATTCAAATCTCAACCGGTTCAATCGCAATGCTGCTAAAAACTACCGGTATTGCTGCTCGCCAACCAAGATGATCCATTTGTCAACCCTCCCACAAGACATCACTGAAGAGGACATTGTAAGCCTTGTGGAGGAGCACGGAACCATTGTCAACAGCAAGGTCTTTGAGATGAATGGAAAAAAGCAGGCTCTTGTTCAGTTTGAAACTGAGGAGCAGGCTACCGAGGCCCTTGTCTGCAAGCACGCAAGCCCACTTTCTGGCTCGGTGATTCGAATCTCCTTTTCTCAGTTGCAGAACATTTGA 1335 0.4404 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAISALQFYANVQPSIRGRNVYVQFSSHQELTTMDQNQGREDEPNRILLVTIHHMLYPITVDVLHQVFSPHGYVEKIVTFQKSAGFQALIQYQSRQSAVTARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRSSQPGYGDAGSMYGVQGSGGRGAGGYSQMANAAAIAAAFGGGLPPGITGTNDRCTILVANLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGAETHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEDIVSLVEEHGTIVNSKVFEMNGKKQALVQFETEEQATEALVCKHASPLSGSVIRISFSQLQNI 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03999 444 MobiDBLite consensus disorder prediction 185 216 - -
Aip05g03999 444 Pfam RRM-like domain 97 174 IPR021790 -
Aip05g03999 444 Gene3D - 254 350 IPR012677 -
Aip05g03999 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Aip05g03999 444 SUPERFAMILY RNA-binding domain, RBD 255 438 IPR035979 GO:0003676
Aip05g03999 444 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 443 - -
Aip05g03999 444 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 440 IPR006536 GO:0003723|GO:0005634|GO:0006397
Aip05g03999 444 CDD RRM1_PTBPH3 6 80 IPR034795 -
Aip05g03999 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 331 IPR000504 GO:0003723
Aip05g03999 444 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Aip05g03999 444 SMART rrm1_1 101 170 IPR000504 GO:0003723
Aip05g03999 444 SMART rrm1_1 258 327 IPR000504 GO:0003723
Aip05g03999 444 SMART rrm1_1 368 437 IPR000504 GO:0003723
Aip05g03999 444 SMART rrm1_1 7 76 IPR000504 GO:0003723
Aip05g03999 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 367 441 IPR000504 GO:0003723
Aip05g03999 444 Gene3D - 98 201 IPR012677 -
Aip05g03999 444 CDD RRM4_PTBPH3 360 438 - -
Aip05g03999 444 CDD RRM3_PTBPH3 256 331 IPR034797 -
Aip05g03999 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 342 - -
Aip05g03999 444 MobiDBLite consensus disorder prediction 185 207 - -
Aip05g03999 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 434 IPR000504 GO:0003723
Aip05g03999 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Aip05g03999 444 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
Aip05g03999 444 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 443 - -
Aip05g03999 444 Gene3D - 1 97 IPR012677 -
Aip05g03999 444 Gene3D - 351 444 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03999 Aip-Chr5 148263921 148268416 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03999 K14948 - gmx:100798234 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03999 05 148263921 148268416 Aip05g03999 05 148263921 148268416 ECH