Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03888 ATGCTTGAATTCAAAATGGAGGCACCACTACTAGTTGATGTGAGGAAAGAATCATGTAGTGATCATCATCATCATGATGAAGAGAATGATTACTTGGGAGTGAAGAGCTTGAAGGATGCAAAGTTTGTGTTGTGGAATGAGACAGTGAAGTTATGGAAGATAGCATTGCCAGTGGCACTTTCCTCACTCTTTCAGTTTCTCATAAATTCCTCAGTTAACATATATGCTGGCCATATTGGAGACATAATTCTCTCTTCTATTTCTGTTTACACTGGTGTCATCAGTTCTATCTATCTTTGTTTGCTGTATGGTATGTCATCAGCAGTGGCAACACTTTGTGGACAAGCATATGGAGCAGGACAAATTCAATCCACTGGAATTTTTGTTCAAAGATCATGGATTGCATTATTTGTGACATCCATATTTTTGTTACCTACACACATATATGCAACACCAATCTTAGAGTTTCTTGGCCAAGAAAAAGGCATAGCCAAAATTGCTGGAAATTATGCCTTACAAGTAATTCCAAACATGTTTTCCTATGCAATTAGTCTTCCAATCCAAAGATTCCTTCAAGCACAATGCAAAGTCAATGCAATCATGTTCATATCATTTGTGTCCCTAGTGATACAAAATTTGTTGCTTTATGTATTCATAAATGCAATGGATTTGGGTACAACAGGGTTAGCTTTGGCCACTAATGTAACAGGTTGGGTTTTTGCTTTGGCTCTTACAATCTATGCTTCTTGTTGGTGCAAAGAAGGGTGGAATGGTTTGTCTTGGATGGCTTTTTCTGATTTATGGGCATTTATTAGGTTAAGTCTTTCATTTTCTGTGATGACTTGCTTAGACCAATGGCATGGTAATTTTGTTGTGCTACTTGTTGGTCAACTTCAAAATCCTGTGATTGCTCTTGGTTCCTATTCTATTTGCATGAATATTCTGGGTATCTACGCCATGCTTCTCTTTGGAATGAGTATCGCCACCAGTGTTCGTGTGTCTAATACACTTGGCATGTCACATCCAAGAGCAGCAAGATACTCATTCTTTGTGGCAATGTTTGAGTCCCTCTTCATGGGGATTTTATTCATGATCGTAATCTTCTTTAGCAAACAACAAATTGCCACAATCTTTACCAACAGTGAGGATATGATCAAAGCTGTGGGTGATTTAGCTAATGTTCTTGCTCTAGCCTTGATTATTAGTAGTGCTTCGCTAGTGATAACAGGTGTTGCTACGGGATGTGGATGGCAAGTAATGGTTGGATACATAAACTTGGCATGTTATTACATTTTTGGACTCTCACTTGGCTATTTTCTTGGTTTCATTCAACATTTTGGTGTGAAGGGGCTATGGGGAGGGACACTGTCCGGAAGTATTATTCAGATTTTGGTCATCACAGTTATTATTTGGAGAACCAACTGGACCAAACAGGTAACACATTGTTATTGTTATTATATGTAA 1464 0.3818 MLEFKMEAPLLVDVRKESCSDHHHHDEENDYLGVKSLKDAKFVLWNETVKLWKIALPVALSSLFQFLINSSVNIYAGHIGDIILSSISVYTGVISSIYLCLLYGMSSAVATLCGQAYGAGQIQSTGIFVQRSWIALFVTSIFLLPTHIYATPILEFLGQEKGIAKIAGNYALQVIPNMFSYAISLPIQRFLQAQCKVNAIMFISFVSLVIQNLLLYVFINAMDLGTTGLALATNVTGWVFALALTIYASCWCKEGWNGLSWMAFSDLWAFIRLSLSFSVMTCLDQWHGNFVVLLVGQLQNPVIALGSYSICMNILGIYAMLLFGMSIATSVRVSNTLGMSHPRAARYSFFVAMFESLFMGILFMIVIFFSKQQIATIFTNSEDMIKAVGDLANVLALALIISSASLVITGVATGCGWQVMVGYINLACYYIFGLSLGYFLGFIQHFGVKGLWGGTLSGSIIQILVITVIIWRTNWTKQVTHCYCYYM 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03888 487 PANTHER MULTIDRUG RESISTANCE PROTEIN 30 480 - -
Aip05g03888 487 TIGRFAM matE: MATE efflux family protein 57 452 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip05g03888 487 PANTHER PROTEIN DETOXIFICATION 30 480 - -
Aip05g03888 487 CDD MATE_eukaryotic 47 481 IPR045069 GO:0042910|GO:1990961
Aip05g03888 487 Pfam MatE 57 216 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Aip05g03888 487 Pfam MatE 279 438 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03888 Aip-Chr5 147040655 147044772 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03888 K03327 - gmx:100789611 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03888 05 147040655 147044772 Aip05g03888 05 147040655 147044772 ECH