Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03887 ATGGCTCCTCCCCGAGGTCGTGGTGGTGCTGGTGGAGGGTTCAGGGGTGGCAGAGGTGACAGAGGCAGAGGGAGAGGTGGTGGTGGTGGAAGAGGTACGCCATTCAAAGCTCGAGGTGGCGGCGGCAGAGGTGGTGGTGGTCGTGGAGGAGGTAGGGGTGGCCGTGGAGGAATGAAGGGAGGCAGCAAGGTTGTGGTTGAACCTCACAGACATGAAGGTATTTTCATTGCAAAGGGTAAAGAAGATGCTCTTGTTACTAAGAATTTGGTTCCTGGTGAAGCTGTTTATAATGAGAAGAGGATCACTGTGCAGAAGGAGGATGGCTCAAAAGATGAGTACAGGGTTTGGAACCCTTTCCGTTCCAAGTTGGCTGCTGCCATTCTCGGTGGGGTTGACAACATATGGATTAAACCTGGTGCTCGAGTCCTGTACCTAGGAGCTGCTTCTGGAACAACTGTTTCACATGTGTCGGATGTTGTTGGTCCGAATGGAGTTGTCTATGCCGTGGAGTTCTCTCATCGTAGCGGGCGTGACTTGGTCAACATGGCGAAGAAACGCACCAATGTTATACCCATTATTGAAGATGCTAGACATCCAGCTAAGTACAGGATGTTGATTGGCATGGTAGATGTGATATTTTCTGATGTTGCGCAGCCTGATCAGGCAAGGATTTTAGCATTGAATGCCTCATATTATCTCAAAGCAGGGGGTCATTTTGTTATTTCAATCAAGGCCAACTGCATAGATTCCACAGTACCAGCGGAGTCGGTGTTTGCAAGTGAAGTCAATAAGCTGAAGGCGGAGCAGTTTAAGCCTTTTGAGCAAGTCACCCTTGAACCATTCGAACGGGACCATGCCTGTGTCGTTGGTGGATACAGAATGCCTAAGAAGAAAAAAGATGCCGAGTAA 909 0.4939 MAPPRGRGGAGGGFRGGRGDRGRGRGGGGGRGTPFKARGGGGRGGGGRGGGRGGRGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQKEDGSKDEYRVWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDVVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLIGMVDVIFSDVAQPDQARILALNASYYLKAGGHFVISIKANCIDSTVPAESVFASEVNKLKAEQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDAE 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03887 302 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 80 293 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aip05g03887 302 ProSitePatterns Fibrillarin signature. 164 178 IPR020813 GO:0003723|GO:0006364|GO:0008168
Aip05g03887 302 SMART Fibrillarin_2 66 294 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aip05g03887 302 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 66 293 IPR029063 -
Aip05g03887 302 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 4 301 - -
Aip05g03887 302 PIRSF Nop17p 34 296 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aip05g03887 302 Gene3D Vaccinia Virus protein VP39 117 294 IPR029063 -
Aip05g03887 302 MobiDBLite consensus disorder prediction 1 63 - -
Aip05g03887 302 Pfam Fibrillarin 66 293 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aip05g03887 302 Gene3D Phosphorylase Kinase; domain 1 61 116 - -
Aip05g03887 302 PRINTS Fibrillarin signature 84 103 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aip05g03887 302 PRINTS Fibrillarin signature 112 131 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aip05g03887 302 PRINTS Fibrillarin signature 139 160 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aip05g03887 302 PRINTS Fibrillarin signature 164 181 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aip05g03887 302 PRINTS Fibrillarin signature 189 218 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aip05g03887 302 PRINTS Fibrillarin signature 219 248 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aip05g03887 302 PRINTS Fibrillarin signature 271 292 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aip05g03887 302 PANTHER FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 4 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03887 Aip-Chr5 147032924 147038996 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03887 K14563 - gmx:100797625 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03887 05 147032924 147038996 Aip05g03887 05 147032924 147038996 ECH