Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03874 ATGATAATTGTAAAAACAGGAACAACAAGAGGCATTGGCGTAGAGACTGCAAGAGTTCTTGCTCTGCGTGGTGTGCACGTGATAATGGCGGTGAGAAACACGAACGCTGCAAAAGATGTGAAAGAAGCAATTCTTAAGGAGATTCCAACAGCTAAGGTTGATGCCATGGAATTAGACCTTAGTTCAATGGAATCTGTCCGCAAATTTGTGTCAGATTTCAATTCCTCTGGTCTCCCACTCAACATCCTAATAAACAATGCAGCAATTCTGGCAACTCCTTTTACTCTGTCCAAAGACAACATTGAACTACAATTTGCCACAAACCATATAGGTCATTTTCTTTTGACAGATCTTTTGTTAGATACCATGAAGAAAACAGCTTATGAAAGTAAGAAAGAAGGAAGAATAATTAATATCTCCTCGGACGGTCACCGATACACATATCCCGAAGGAATTCAATTTGATACAAATAATGATAAATCAAGtggacaactagatatcgcgtttgactctataaaacgatatcatttttgttttggcactcaaatagtaaaaaaaaattGGGTAGATATAACTGCTAATTCTCTTCATCCGGGAGCTATTGTCACCAATATTTTAGATCCTCATCTTGTTGACTCTATACCACCCGAGCTAATTAATTCTCTTGGGAAATATGAGATTAAAACCCTCCAGCAAGGAGCAGCAACAACATGCTATGTAGCATTGCATCCACAAGTGAGGGGAATTAGTGGCCAATATTTCTCAGATTGTAATGTGTCCAAGCCAAGCACCCATGGAACTGACACTCTTATGGCCAAGAAACTCTGGGATTTATCCATGAAATTAACTCATCAATGA 858 0.359 MIIVKTGTTRGIGVETARVLALRGVHVIMAVRNTNAAKDVKEAILKEIPTAKVDAMELDLSSMESVRKFVSDFNSSGLPLNILINNAAILATPFTLSKDNIELQFATNHIGHFLLTDLLLDTMKKTAYESKKEGRIINISSDGHRYTYPEGIQFDTNNDKSSGQLDIAFDSIKRYHFCFGTQIVKKNWVDITANSLHPGAIVTNILDPHLVDSIPPELINSLGKYEIKTLQQGAATTCYVALHPQVRGISGQYFSDCNVSKPSTHGTDTLMAKKLWDLSMKLTHQ 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03874 285 PANTHER RETINOL DEHYDROGENASE 4 282 - -
Aip05g03874 285 Gene3D - 2 285 - -
Aip05g03874 285 PRINTS Glucose/ribitol dehydrogenase family signature 2 19 IPR002347 -
Aip05g03874 285 PRINTS Glucose/ribitol dehydrogenase family signature 78 89 IPR002347 -
Aip05g03874 285 PRINTS Glucose/ribitol dehydrogenase family signature 128 144 IPR002347 -
Aip05g03874 285 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Aip05g03874 285 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 282 - -
Aip05g03874 285 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 262 IPR036291 -
Aip05g03874 285 Pfam short chain dehydrogenase 3 150 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03874 Aip-Chr5 146937264 146940430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03874 2 154 Acyl Lipid Metabolism Gene Families AT3G55290 30.818 6.40e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03874 - - cam:101490020 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03874 05 146937264 146940430 Aip05g03874 05 146937264 146940430 ECH
Aip05g03874 05 146937264 146940430 Aip09g04031 09 146638299 146640305 PCT