Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03825 ATGAATTCTTTAGTCCTTTTAGGTCATAGGATGGTTCACAAGTTTTCACATTGTGTGAACATTTGTAGGAATTTATGCAATCAACCTTTTCACTGCGATGATGATGAGGTTCGGAGTGGTTTTGAATTGGTTGAGGAGCCTTTGAAGAAAATGTGTGCTACCTCTTGTGACACTGTTGATTTTGATCCGAATGAGGATAATGCTAGCTTAGACAGGAAGCATTTTTTGCATAGGAATGGGTCCATAGAAAATGTGGGAATGGATGCTGAGAAAATTCTCGAGGTTCTTGGACAGGATAGTCCCGAGTTAGATTTTAGACGGGCTTTGGATGGATTGCGTGTTAGGCCATCAGCTTTTCTCGTGAGGGAGGTTCTGTATGGGATGTTGAAAGGCATAAACTGTGAAAACAAGGGGAGATGCGCTAAACTGGCATACAAATTTTTTCTGTGGTGTGGGCAGCAGGAGGGTTACTGGCACACTGCAAATTCCTATCACTTGGTTCTGCAGATATTTGCCGAGTGTGATGAGTTTCAAGCAATGTGGAGGCTTGTTGATGAGATGATTGAGAAAGGATTTCCAGCTACTGCTCGCACTTTCCACATTTTGATCTGCACTTGTGGTGAGGCAGGGTTTGCTAGGAAGTTGGTGATGAAGTTCATTAAGTCAAAATCATTTAACTACCGGCCCTTTAGGCACTCCTACAATGCAATTCTCCACTGTCTTCTTGTTTTAAACCAGTACCGTTTGATTGAGTGGGTTTATAGGCAGATGTTGCTTGATGGTTTTTCCTCTGATGTTTTGACTTACAACATTGTTATGTTAGCAAAGTATCGACTTGGAAAATTCAATCACTTTAACAGGTTGCTTTATGAGATGGGTAGAAATGGTCATTCTCCTGATTTTCATACTTACAACATTCTTCTTCATGTTCTTGGTAAAGGAGATAAACCTCTTGCAGCTCTTAATCTTCTAAATAGCATGAAAGAAACTGGTATAGAGCCAACTGTTCTTCATTTCACCACATTAATTGATGGACTAAGCAGAGCTGGAAATCTAGAGGCTTGCAAATATTATTTTGACGAAATGATAAAAAATGGGTGTATGCCAGATGTGGTGGCATACACTGTAATGATCACAGGATATGTGGTGGCTGGTGATCTTGAAAGAGCTCAGGAAATGTTCAATGAGATGATTTCTAGAGGACAAATCCCAAATGTATTTACATACAATTCCATGATTCGCGGATTATGTATGGCCAGAAAGTTTGATGAAGCATGCTCAATGCTACAGGAAATGGAGGCCAAAGGTTGTAGTCCAAATTTTATTGTCTATACTACACTAGTGAGTAATTTACGGAATGCTGGAAAGCTTGCTTTAGCACATAAAGTGATAAGGCAGATGATGGAGAAGGGGAAGTATACCCACCTTATTTCAAGCATCAAGCTAGTTATTAAGCCGGAGAACCAAATTGGTTGA 1476 0.4011 MNSLVLLGHRMVHKFSHCVNICRNLCNQPFHCDDDEVRSGFELVEEPLKKMCATSCDTVDFDPNEDNASLDRKHFLHRNGSIENVGMDAEKILEVLGQDSPELDFRRALDGLRVRPSAFLVREVLYGMLKGINCENKGRCAKLAYKFFLWCGQQEGYWHTANSYHLVLQIFAECDEFQAMWRLVDEMIEKGFPATARTFHILICTCGEAGFARKLVMKFIKSKSFNYRPFRHSYNAILHCLLVLNQYRLIEWVYRQMLLDGFSSDVLTYNIVMLAKYRLGKFNHFNRLLYEMGRNGHSPDFHTYNILLHVLGKGDKPLAALNLLNSMKETGIEPTVLHFTTLIDGLSRAGNLEACKYYFDEMIKNGCMPDVVAYTVMITGYVVAGDLERAQEMFNEMISRGQIPNVFTYNSMIRGLCMARKFDEACSMLQEMEAKGCSPNFIVYTTLVSNLRNAGKLALAHKVIRQMMEKGKYTHLISSIKLVIKPENQIG 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03825 491 PANTHER OS10G0506000 PROTEIN 1 481 - -
Aip05g03825 491 Gene3D Tetratricopeptide repeat domain 11 220 IPR011990 GO:0005515
Aip05g03825 491 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 481 - -
Aip05g03825 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Aip05g03825 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Aip05g03825 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Aip05g03825 491 Gene3D Tetratricopeptide repeat domain 328 399 IPR011990 GO:0005515
Aip05g03825 491 Gene3D Tetratricopeptide repeat domain 400 472 IPR011990 GO:0005515
Aip05g03825 491 Gene3D Tetratricopeptide repeat domain 221 327 IPR011990 GO:0005515
Aip05g03825 491 TIGRFAM PPR: pentatricopeptide repeat domain 442 471 IPR002885 -
Aip05g03825 491 TIGRFAM PPR: pentatricopeptide repeat domain 407 440 IPR002885 -
Aip05g03825 491 TIGRFAM PPR: pentatricopeptide repeat domain 372 406 IPR002885 -
Aip05g03825 491 TIGRFAM PPR: pentatricopeptide repeat domain 302 336 IPR002885 -
Aip05g03825 491 TIGRFAM PPR: pentatricopeptide repeat domain 339 371 IPR002885 -
Aip05g03825 491 Pfam PPR repeat 339 367 IPR002885 -
Aip05g03825 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Aip05g03825 491 Pfam PPR repeat family 369 417 IPR002885 -
Aip05g03825 491 Pfam PPR repeat family 265 311 IPR002885 -
Aip05g03825 491 Pfam Pentatricopeptide repeat domain 428 471 IPR002885 -
Aip05g03825 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Aip05g03825 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Aip05g03825 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03825 Aip-Chr5 146463789 146465495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03825 253 485 Glycosyltransferase AT1G05670 26.609 1.10e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03825 - - ccaj:109794849 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03825 05 146463789 146465495 Aip05g03825 05 146463789 146465495 ECH