Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03804 ATGGGGAATTCATTTGGGTGCTCAGCCTCTGGGGAGAGGCTGGTGTCGGCGGCAAGGGACGGCGATTTGGTTGAGGCCAAGATGCTTCTAGAATGCAACCCTTGTCTTTCTAAATACTCAACCTTTGGTGGCCTCAATTCCCCTCTTCATTTTGCAGCTTCCAAGGGCCATAACGAGATTGTGGCTTTGTTGCTTGAGAATGGAGCTGATGTGAATTCAAGGAACTATTGCGGCCAGACGGCTTTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTTCAAACCCTTCTGCTCTTCAGATGCAATGTTGTGAGATCGGATTATCTCAGTGGAAGGACTGCTCTTCACTTTGCAGCTGTGAATGGGCATGTAAGATGCATTAGACTCGTCATGGCTGACTTTGTTCCAAGTGCTCCGTACGAGGCTTTACATGCTCCCACGGATGCTGACATTGATGACGGATCAAATGTTAAAAGCAAACATGAACAAAGCGCACTGTCCAAGTTTGTAAACAAGGCGGCTGATGCCGGTATTACAGCCCTTCATATGGCTGCCTTAAATGGCTATTTCGATTGTGTACAACTGCTTCTTGATCTCAATGCAAATGTCTCAGCTGCGACATTTCACTATGGAACGGCAATGGATTTAATAGGAGCCGGAAGCACTCCATTGCATTATGCTGCTTGTGGGGGAAATTTGAAATGCTGTCAGGTAAGAATAGCTTCAACTTTGATCTGTAATATTCCATCTTCTCCTTTGAATCTAGCAAAAATGCTTTTATTCTTTCAGATCCTCCTTTCGGGAGGTGCAAGTCGGACAGCTTTGAATTGCAATGGATGGCTTCCACTCGATGTTGCGAGGATGTGGGGGCGTCACTGGCTTGAACCAATATTAGCACCCACTTCTGAAGCTACAATACCATCATTCCCTCCATCAAATTATTTGTCTTTGCCACTTATGAGTGTGCTCAACATAGCCAGAGAGAGTGGATTGCAATCATCTCCTACCTCTTCCGACGAAATTGATTTTTGTGCCGTTTGCCTGGAGAGGCCATGTTCAGTGGCTGCAGAAGGATGTCGACATGAGCTTTGTGTTAAATGTGCACTCTATCTTTGCTCAACAAGCAATGTTTCGTCCGAAATGCTCGGCCCGCCGGGCTCCATCCCTTGCCCTCTATGTAGACGTGGAATTGTCTCTTTTGTCAAGTTACCAGGTTCACAAGCAAGAGAGACTAAAGTCAACGGATCGCTCGGCTTATGTACTCCATGCATGCTACATCCACGTGATATAAATAGGCCATCTTTCTTTCATACACCGGAGATTCGAAAGAATCGTGTCGCTTCTATTCCTTCAGAGATGCTTTGCCCTGTGACTTGTAGTCCATTTCCATCAGTTGCACTTCCTCTATGTACCTGCAATGATGGTCCTTGTCCACCATTTGAGCCCCGAGAAGTTGAAGCTCAAGATGAATCGCCTCGTCACTCACAAGTATCATCAACGGATCAGGATAAAATGGAAGGGCCAAGATTGGAGAAAACAACATGCTCAAGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCATCAATGCAATTCAGAGATCAACGCTTGA 1617 0.4595 MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLSKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVVRSDYLSGRTALHFAAVNGHVRCIRLVMADFVPSAPYEALHAPTDADIDDGSNVKSKHEQSALSKFVNKAADAGITALHMAALNGYFDCVQLLLDLNANVSAATFHYGTAMDLIGAGSTPLHYAACGGNLKCCQVRIASTLICNIPSSPLNLAKMLLFFQILLSGGASRTALNCNGWLPLDVARMWGRHWLEPILAPTSEATIPSFPPSNYLSLPLMSVLNIARESGLQSSPTSSDEIDFCAVCLERPCSVAAEGCRHELCVKCALYLCSTSNVSSEMLGPPGSIPCPLCRRGIVSFVKLPGSQARETKVNGSLGLCTPCMLHPRDINRPSFFHTPEIRKNRVASIPSEMLCPVTCSPFPSVALPLCTCNDGPCPPFEPREVEAQDESPRHSQVSSTDQDKMEGPRLEKTTCSSMFWGRRSCSREHQCNSEINA 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03804 538 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Aip05g03804 538 PRINTS Ankyrin repeat signature 193 207 IPR002110 GO:0005515
Aip05g03804 538 SMART ANK_2a 177 206 IPR002110 GO:0005515
Aip05g03804 538 SMART ANK_2a 44 73 IPR002110 GO:0005515
Aip05g03804 538 SMART ANK_2a 77 106 IPR002110 GO:0005515
Aip05g03804 538 SMART ANK_2a 220 249 IPR002110 GO:0005515
Aip05g03804 538 SMART ANK_2a 111 141 IPR002110 GO:0005515
Aip05g03804 538 MobiDBLite consensus disorder prediction 484 511 - -
Aip05g03804 538 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Aip05g03804 538 Gene3D - 6 136 IPR036770 -
Aip05g03804 538 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Aip05g03804 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 416 IPR013083 -
Aip05g03804 538 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Aip05g03804 538 SUPERFAMILY RING/U-box 344 401 - -
Aip05g03804 538 PANTHER HOMEOBOX PROTEIN WARIAI 1 243 - -
Aip05g03804 538 ProSitePatterns Zinc finger RING-type signature. 360 369 IPR017907 -
Aip05g03804 538 PANTHER HOMEOBOX PROTEIN WARIAI 261 538 - -
Aip05g03804 538 MobiDBLite consensus disorder prediction 484 512 - -
Aip05g03804 538 Gene3D - 142 296 IPR036770 -
Aip05g03804 538 Pfam Ankyrin repeats (3 copies) 170 238 IPR002110 GO:0005515
Aip05g03804 538 Pfam Ankyrin repeats (3 copies) 49 132 IPR002110 GO:0005515
Aip05g03804 538 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 243 - -
Aip05g03804 538 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 261 538 - -
Aip05g03804 538 ProSiteProfiles Zinc finger RING-type profile. 345 395 IPR001841 -
Aip05g03804 538 SUPERFAMILY Ankyrin repeat 14 299 IPR036770 -
Aip05g03804 538 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Aip05g03804 538 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Aip05g03804 538 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03804 Aip-Chr5 146290220 146293521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03804 31 313 Miscellaneous Gene Families AT5G02620 26.524 9.15e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03804 K19044 - gmx:100812809 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03804 05 146290220 146293521 Aip05g03804 05 146290220 146293521 ECH
Aip05g03804 05 146290220 146293521 Aip09g03996 09 146400632 146405089 PCT