Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03802 ATGCGAACCTTCATCGTACACAGCTCCAAGCTCATCAGAAGCAAGATCGAAAATATCCCTATGATTCAGCATCAGCATCAGCATCACCATCATCCGAATTTCAATCCCACGCGAGCAATGTCGCAATCCACCTCGATCCCGAAGAAAATGCAGAGGGTTCGCGACCACGGCTACGACAATTACATGGAAGTCGAGAAGAAGACGCGGAAGGTCCTCAAGGTCCAGAACATCATCCTCAACGAGCACAACCAATCGCTCCCAATCTCGCGCCTCGAAACCCTAGCGCACCGCATAGGCTTCACGCGCAACACAGTCGGTGCTTTCATCCTCAAGTTCCCTCACGTCTTCGAAATCTTCGAGCACCCCGTGCAGCGCGTGCTCTTCTGCCGCCTCACGCGCCAGGCAATCCTCCAAATCAAGCAGGAGAACGAAGCATTGCTCGCGCAGGTTCCACGCGCCGTCACGTGCCTCCGCAAGCTTCTCATGATGTCGAACACGCAGCGGCTTCGCCTCGAGCACGTGAGGATCGCACGCTCCGCTCTAGGGTTACCGGACGACTTCGAATTCTCGGTGGTTCTAAGGTATCCCCAATTTTTTCGCTTAGTTGATTCAAATGAGAGAAGGAACAAGTACATTGAGCTTGTAGAAAGAGAACCTAGTTTAGCAGTCTGTGCAATTGAGAATGTTAGAGAGAGAATTTACAGGGAGAGAGGTGGTGATGCTGAAGATGTTAGGTTCTCATTTCTAATTGATTTTCCACCAGGTTTTAAGATTGGGAAGTATTTTAAGATTGCAATGTGGAAGTGGCAGAGGTTACCTTATTGGTCCCCTTATGAGGATGTTTCTGGCTTTGATTTGAGGTCGATTGAGGCGCAAAAGAGGATGGAGAAGAGGGCTGTTGCCTCAATCCACGAGTTGTTGTCATTGACCGTGGAGAAGAAGATTACCTTGGAGAGGATCGCACACTTCCGGCAGGCGATGAACCTGCCGAATAAGTTGAAGGATTTCCTTCTCCAGCACCAGGGGATTTTCTACGTGTCGACAAGGGGGAACCAGGGGAAGCTCCACACGGTTTTCCTGCGAGAGGCTTATAGGAAGGGTGAGTTGATTGAGCCAAATGATCTGTATTTGGCGCGGAGGAAGCTGGCTGAGTTGGTCTTGTTGAGCCCCCGGAAGGCGAGGATTGACAGGGAATTGGTTGGATACAGGAGAAGCAGGTTGGATGATGAGATGGGGCAGATAGCAAGGGTAGCTGTGGAGGATCCTTGTGAGGACTTCAAGGATGGAGATGTAATGGATCAGGATAAGGATGAAGAGGGCAATTTGACCTCAGACATAGGTTCAGATGTTGATTCGGATGTTGGAGATGAAGACAATAGTTTTGATGAAGATAGTGTATCAAGGCAAGAAACATCATAA 1419 0.4954 MRTFIVHSSKLIRSKIENIPMIQHQHQHHHHPNFNPTRAMSQSTSIPKKMQRVRDHGYDNYMEVEKKTRKVLKVQNIILNEHNQSLPISRLETLAHRIGFTRNTVGAFILKFPHVFEIFEHPVQRVLFCRLTRQAILQIKQENEALLAQVPRAVTCLRKLLMMSNTQRLRLEHVRIARSALGLPDDFEFSVVLRYPQFFRLVDSNERRNKYIELVEREPSLAVCAIENVRERIYRERGGDAEDVRFSFLIDFPPGFKIGKYFKIAMWKWQRLPYWSPYEDVSGFDLRSIEAQKRMEKRAVASIHELLSLTVEKKITLERIAHFRQAMNLPNKLKDFLLQHQGIFYVSTRGNQGKLHTVFLREAYRKGELIEPNDLYLARRKLAELVLLSPRKARIDRELVGYRRSRLDDEMGQIARVAVEDPCEDFKDGDVMDQDKDEEGNLTSDIGSDVDSDVGDEDNSFDEDSVSRQETS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03802 472 MobiDBLite consensus disorder prediction 425 443 - -
Aip05g03802 472 MobiDBLite consensus disorder prediction 26 48 - -
Aip05g03802 472 Pfam Plant organelle RNA recognition domain 53 389 IPR021099 GO:0003723
Aip05g03802 472 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 24 447 IPR045040 GO:0003723
Aip05g03802 472 MobiDBLite consensus disorder prediction 425 472 - -
Aip05g03802 472 MobiDBLite consensus disorder prediction 34 48 - -
Aip05g03802 472 PANTHER PROTEIN ROOT PRIMORDIUM DEFECTIVE 1 24 447 IPR040295 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03802 Aip-Chr5 146282439 146284357 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03802 - - adu:107491171 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03802 05 146282439 146284357 Aip05g03802 05 146282439 146284357 ECH