Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03748 ATGGTTTCTTCAATTTCCTCGTCATCAAGAAAATCCACAGCGGATCCGGCATCATGGTACTGTTCCATAGTCCTGTTGTCTCTCATACTCTTGGCCTCCATAAAGGAGGCCTATGAATATGACGACGACAACTCGGCCGCCACGGCTGCGGCCGTGACGGGGCAGAGGAGCAACCTCCGTGTACGGCCGTGCGACGAGATATACGTGGTGGGAGAAGGAGAGACACTTCACACCATAAGTGACAAGTGCAGTGATCCATTCATCGTTGAACGCAACCCTCATATTCATGATCCTGATGATGTCTTTCCTGGCCTTGTCATCAAAATCACACCTAATTTTATTAATTAA 348 0.4856 MVSSISSSSRKSTADPASWYCSIVLLSLILLASIKEAYEYDDDNSAATAAAVTGQRSNLRVRPCDEIYVVGEGETLHTISDKCSDPFIVERNPHIHDPDDVFPGLVIKITPNFIN 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03748 115 PANTHER EMBRYO SAC 1 9 112 - -
Aip05g03748 115 Pfam LysM domain 68 109 IPR018392 -
Aip05g03748 115 Gene3D LysM domain 56 113 IPR036779 -
Aip05g03748 115 CDD LysM 67 109 IPR018392 -
Aip05g03748 115 PANTHER LYSM DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED 9 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03748 Aip-Chr5 145584136 145585217 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03748 - - gmx:106794425 145.976
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03748 05 145584136 145585217 Aip05g03748 05 145584136 145585217 ECH