Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03710 ATGAGCTTCGCGGCCTACAAGATGATGCACTGCCCAACCGGCATCGATAACTGTGCCTCCGGTTTCCTCACTCACTCACGCGCCGACTACGTTCCACGCGTCCCTCCTCTTCCCGCCGACGACCTGGACCCTGACTCAGACTGGCCCAACCCCGCCACCCGCCGCGACCTCGGCCCCATTCCCAACCTTATCCTCACTTCTGCCAATGTCCTCGAAGTCTATGCCGTCAGGGTCCACGAGGAATCTGCTAAGGGTCCTCCGGCTGCAGCTGAGTCCAGCCGTGGCGGCGTTTTCGACGGCGTCACCGGGGCCTCACTCGAGCTTGTTTGCCATTACAGGTTACATGGTAATGTTGAAGCCATGGGTGTGTTGAGCATTGGAGCTGGTGATGGTTCTAGAAGGAGGGATTCAATCATCTTAACTTTTAAAGATGCAAAGATTTCAGTTCTAGAGTATGATGATTCTATTCATGGACTTCGTACAAGTTCCTTGCATTGTTTTGAGGGTCCAGAATGGCTTCATTTGAAAAGAGGAAGAGAACAGTTTGCAAATGGTCCCCTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGTGGGGTTCTTGTCTATGATTTGCAAATGATAATACTAAAGGCTACTCAGGCTGGTTCTGGTTTAGTTGGAGACGATGATACCTTGGGTTCTGGAGGTGCAGTTGCTGCTCGTATCGAGTCATCTTATATGATAAATCTACGGGACTTGGATATGAGGCATGTAAAAGATTTTACATTTGTTCATGGATATATTGAACCTGTTATGGTCATCCTGCATGAATGCGAGCTTACTTGGGCTGGGCGTCTCTCGTGGAAGCACCATACATGCATGATATCTGCACTTAGTATTAGCACAACTTTGAAGCAGCATCCACTCATTTGGTCAGCTGTTAATCTCCCCCATGATGCCTACAAGCTTCTAGCAGTGCCCTCACCAATAGGTGGTGTTCTTGTAATTGGAGCTAACACTATTCATTATCATAGTCAGTCAGCTTCATGTGCATTGGCCTTGAATAGCTATGCTGTTTCACTTGATAGCAGTCAGGAGATGCCAAGATCAACTTTCAATGTGGAGCTTGATGCTGCCAATGCAACTTGGCTGTCAAATGATGTGGCCTTGCTGTCAACAAAAACTGGCGAACTGCTATTGCTTGTGCTTGTTTATGATGGAAGGGTCGTGCAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTTTGTCATCTGGTATAACGACAATTGGAAATTCTCTGTTTTTTCTCGCGAGTCGATTGGGAGACAGTATGCTGGTGCAATTTTCTTGTGGATCTGGTGTTTCAATGTCATCGTCTAATAATCTAAAAGAGGAGGTTGGTGATATTGAAGTAGATGCTCCTTCATCAAAGAGATTGCGAAGGTCACCTTCTGATGCTTTGCAAGATTTGGTTAGTGGCGAGGAGCTTTCATTGTATGGATCTGCACCAAATAGAACAGAATCAGCACAGAAAACATTCTCATTTGCAGTTAGGGATTCATTGATTAACGTTGGTCCTCTAAAAGATTTCTCATATGGTTTGAGGATAAATGCTGATGCAAATGCTACAGGGATTGCCAAACAGAGTAACTATGAATTGGTGTGCTGTTCTGGTCATGGAAAGAATGGTTCTATCTGTGTTCTTCGGCAATCAATTCGCCCAGAAGTGATAACTGAGGTTGAACTTCCTGGTTGCAAAGGAATTTGGACTGTTTATCATAAGAGCTCACGGTCTCATAGTGCTGATTCCTCTAAGATGGCTAATGATGACGATGAATATCATGCATACCTGATTATAAGTTTGGAGGCTCGTACTATGGTACTAGAAACAGCTGATCTTCTTAGTGAGGTTACTGAAAGTGTCGAGTATTATATTCGTGGTAAAACACTTGCTGCAGGAAATTTATTTGGAAGGCGTCGAGTTATCCAAGTTTTTGAGCATGGTGCTCGAATTCTTGACGGGTCTTTTATGACCCACGAAAAATTTTTTGGATCTTCTAACTCTGAATCTAATTCTGGATCTGAGAATGTGATGGCGGTTTCTGTTTCTATTGCTGATCCATACGCATTGATCAGAATGAGCGATGGAAGTATTCGACTTTTAATTGGAGATCCTAGTACCTGCACCATTTCTGTTACTACTCCGGCTTCACTTGAAAGCTCAAAAGGATCAGTTTCTTCTTGCACACTGTATCATGATAAAGGGCCTGAGCCATGGCTAAGGAAGACAAGTACTGATGCATGGCTTTCTACTGGTGTTGGTGAGGCTATTGATGGTGCAGATGGTGCAGCTCAGGACCATGGAGATATTTATTGTGTTGTGTGTTATGAAAATGGTAGCCTTGAAATATTTGATGTGCCCAATTTTAGTTGTGTTTTTTCTGTGGAAAACTTTATGTCTGGAAAGAGTCACCTTATTGATGCTCTGATGAAAGAGGTGCCAAAAGATTTTGAAATACTGGACAGAGGTTCCAATGGCATGAGTGGTCAAGGCAGGAAGGAAAATGTTCCGGATATGAAAGTTGTTGAGTTAGCCATGCACAGATGGTCAGGACAGCACAGCCGTCCATTTCTTTTTGGGATTTTGAGTGATGGAACAATTCTTTGTTATCATGCCTATCTTTATGAAAGTCTAGATGGTAATTCCAAACTTGAGGATTCAGTATCTGCAGGAGGACCAGCTGGTCTTAACAGTACTAATGTTTCCAGGCTTAGAAATTTGAGATTTGTTCGGGTTCCCATGGATGCATATGCCAGGGAGGAGACATTAAATGTATCCCCTTGTCAGCAAATTACCGTTTTCAAGAATATTGGTGGTTATCAAGGATTCTTTTTATCAGGGTCTAGACCGGCTTGGGTTATGATGTTGAGAGAGCGATTACGTGTTCATCCACAGCTATGTGATGGATCTATTGTTGCTTTTACGGTTCTTCACAATGTGAACTGCAACCATGGGCTCATATATGTTACATCACAGGGTGTTTTGAAGATATGCCAGTTGCCTTCTGGATCAAACTATGACTGCTACTGGCCTGTGCAGAAAATTCCACTGAAGGCCACCCCACATCAAGTAACATACTTTGCGGAGAAGAATCTATATCCACTTATTGTCTCAGTTCCAGTTCCTAAACCACTTAATCAAGTTGTTTCTCTAGTTGAACAAGATTCCAACCATCAGAGTGAGAGCCAGAATCTAAATCCTGATGAACAAAACCGTTTTTATTCTGTTGATGAATTTGAGGTTCGTATTATGGAGCCAGATAAGTCTGGTGGCCCTTGGCAAACAAAGGCAACAATTCCTATGCAAACTTCTGAAAATGCCCTTACTGTGAGAATGGTTACACTGCTGAATACATCCTCCAAAGAAAATGAAACACTTTTGGCTGTTGGCACTGCTTATGTGCAAGGAGAAGACGTGGCTGCTAGAGGACGTATCCTGCTGTTCTCTTTAGGAAAAAATACCGATAATCCTCAAACTCTGGTTTCAGAGGTGTACTCAAAGGAATTAAAAGGAGCTATATCTGCCTTGGCCTCTCTTCAGGGCCATCTGTTGATAGCATCTGGTCCAAAAATTATTTTGCACAAGTGGACTGGCACTGAGTTGAATGGGATTGCATTTTTTGATGCACCACCATTACATGTTGTGAGCTTAAATATAGTAAAAAACTTCATCCTCATTGGTGACATCCATAAAAGTATATACTTCCTTAGTTGGAAAGAGCAGGGTGCTCAACTTAGCTTATTAGCCAAAGATTTCGGTAATCTTGATTGCTTTGCGACGGAGTTTCTGATTGATGGGAGTACTCTGAGTCTCATGGTTTCAGATGATCAAAAGAACATCCAGGTCTTTTACTATGCACCGAAGATGTCCGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCCGAATTTCATGTCGGTGCCCATGTGACTAAGTTCTTGAGGTTGCAGATGCTATCCACTTCTGATCGAAGTGGTTCTGGCTCCGATAAAACCAATCGATTTGCCTTATTGTTTGGTACCTTGGATGGCAGTATAGGTTGCATTGCGCCTCTCGATGAACTTACATTTCGAAGACTTCAATCATTACAGAGAAAGCTTGTTGATGCTGTACCCCATCTTGCTGGCCTGAATCCGAGAGCTTTCAGGCAGTTCCAATCAAATGGAAAGGCCCATCGGCCTGGCCCCGACAGTATAGTGGACTGTGAGCTTCTATGCCATTATGAAATGCTTCCGTTGGAGGAACAACTTGAAATCGCACACCAGGTTGGAACAACTAGATCACAAATCCTCTCAAATCTAAGTGATCTGGCTCTTGGAACTAGCTTCTTGTGA 4377 0.4343 MSFAAYKMMHCPTGIDNCASGFLTHSRADYVPRVPPLPADDLDPDSDWPNPATRRDLGPIPNLILTSANVLEVYAVRVHEESAKGPPAAAESSRGGVFDGVTGASLELVCHYRLHGNVEAMGVLSIGAGDGSRRRDSIILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFANGPLVKVDPQGRCGGVLVYDLQMIILKATQAGSGLVGDDDTLGSGGAVAARIESSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHECELTWAGRLSWKHHTCMISALSISTTLKQHPLIWSAVNLPHDAYKLLAVPSPIGGVLVIGANTIHYHSQSASCALALNSYAVSLDSSQEMPRSTFNVELDAANATWLSNDVALLSTKTGELLLLVLVYDGRVVQRLDLSKSKASVLSSGITTIGNSLFFLASRLGDSMLVQFSCGSGVSMSSSNNLKEEVGDIEVDAPSSKRLRRSPSDALQDLVSGEELSLYGSAPNRTESAQKTFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSICVLRQSIRPEVITEVELPGCKGIWTVYHKSSRSHSADSSKMANDDDEYHAYLIISLEARTMVLETADLLSEVTESVEYYIRGKTLAAGNLFGRRRVIQVFEHGARILDGSFMTHEKFFGSSNSESNSGSENVMAVSVSIADPYALIRMSDGSIRLLIGDPSTCTISVTTPASLESSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGAAQDHGDIYCVVCYENGSLEIFDVPNFSCVFSVENFMSGKSHLIDALMKEVPKDFEILDRGSNGMSGQGRKENVPDMKVVELAMHRWSGQHSRPFLFGILSDGTILCYHAYLYESLDGNSKLEDSVSAGGPAGLNSTNVSRLRNLRFVRVPMDAYAREETLNVSPCQQITVFKNIGGYQGFFLSGSRPAWVMMLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDCYWPVQKIPLKATPHQVTYFAEKNLYPLIVSVPVPKPLNQVVSLVEQDSNHQSESQNLNPDEQNRFYSVDEFEVRIMEPDKSGGPWQTKATIPMQTSENALTVRMVTLLNTSSKENETLLAVGTAYVQGEDVAARGRILLFSLGKNTDNPQTLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFFDAPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLSLLAKDFGNLDCFATEFLIDGSTLSLMVSDDQKNIQVFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRSGSGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQRKLVDAVPHLAGLNPRAFRQFQSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHQVGTTRSQILSNLSDLALGTSFL 1458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03710 1458 SUPERFAMILY WD40 repeat-like 655 812 IPR036322 GO:0005515
Aip05g03710 1458 Pfam CPSF A subunit region 1093 1423 IPR004871 GO:0003676|GO:0005634
Aip05g03710 1458 MobiDBLite consensus disorder prediction 35 54 - -
Aip05g03710 1458 Gene3D - 59 455 IPR015943 GO:0005515
Aip05g03710 1458 Gene3D - 982 1365 IPR015943 GO:0005515
Aip05g03710 1458 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 2 1449 - -
Aip05g03710 1458 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1 2 1449 - -
Aip05g03710 1458 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 136 698 IPR018846 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03710 Aip-Chr5 145065806 145079478 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03710 K14401 - gmx:100785543 2521.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03710 05 145065806 145079478 Aip05g03710 05 145065806 145079478 ECH