Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03578 ATGGCTACTCCGCAAGCTTTCCACTCTTCTTCTTTTCCTTCCTTCAGGGACAGCGAGtgggaattcgatgtgttcctcagcttcagaggccctgaaactcgctacggtttcactggctatctCCACAAAGCATTTTGTGAGAAGGGAATCCGTACCTTCATGGATCTTGAGGATCTTATCAGTGGCAATAAAATCCAACAAACATTTGCTAGAGCAATTGAAAGCTCCAGGATTGCCATTATTGTGTTCTCGGAGCATTATGCTGACACCGATTTCTTGTTGAGGGAACTTGTCAAGCTCTTGGAGTGCTCTCAACGCTGTGGCCAGTTTATTTTGCCGATTTTCTATTTGGTGGATCCCGGAGAGCCGCTCTTCGTGACGCAGCCAACTTATCCGGCTTGcattacaaaggGGATGAATTTGAATACGAATTTATTGAGAGGATCGCTAAACAGtgacgtccgacgacagacaggtagttttggggcagcaatagctaaacatgaggagaagttcaaggacgacctgtcgaaagtcgaaaaatggaagcgggctttgcatcgagcagctaattttactggctTTGTTTTCGATGGGAAAAAATATGAACACGAGTTAATTGGGAAGATTGTTGAAGTGGTGTCAAGGGAGATTAAACGAGTTGCTTTACACGTTGCTGACTATCCAATTGGACTAGAGTCTCAAGTTTCAGAAGTAAAATCGCTTATATTCTCTGATGGCTATGATGGAGTCCACATGGTAGGGATTCATGGAAATGGTGGATCAGGCAAAACAACAATAGCTCATGCAATTTATAATTTGATTGCTAACGGTTTTGAAAGTATATGTTTTCTTGAAAATGTGAGAGAAAATTCATATAAGCATGGCTTAGTGTATCTTCAAAATATGCTTCTTTCTAATGTATTCGAAAGGAAGAATCTCAAATCAACAAGTTTTGATCAAGGAATTTCAACAATAAAGCACTGGCTCCAACAAAAGAGGATCCTTTTGATTCTAGATGATGTTGACAAACCAGAGCAATTACAAGCTCTTGCTGGAAAACCTGATTGGTTTGGCCGTGGAACTAGAGTCATTGTTACGACAAGGGACAAATATTTACTAGAGAGCCATGGGATTGAAAGAATCTATGAGATGGAGAACTCAAATTCGGAATCAAATATCTCTACTGCATCAGATGGAAAAGACAACGGAGATCAACTGGGTGAAAAAAATCATTTTCCAAGAACAAGTCAATGA 1257 0.3325 MATPQAFHSSSFPSFRDSEWEFDVFLSFRGPETRYGFTGYLHKAFCEKGIRTFMDLEDLISGNKIQQTFARAIESSRIAIIVFSEHYADTDFLLRELVKLLECSQRCGQFILPIFYLVDPGEPLFVTQPTYPACITKGMNLNTNLLRGSLNSDVRRQTGSFGAAIAKHEEKFKDDLSKVEKWKRALHRAANFTGFVFDGKKYEHELIGKIVEVVSREIKRVALHVADYPIGLESQVSEVKSLIFSDGYDGVHMVGIHGNGGSGKTTIAHAIYNLIANGFESICFLENVRENSYKHGLVYLQNMLLSNVFERKNLKSTSFDQGISTIKHWLQQKRILLILDDVDKPEQLQALAGKPDWFGRGTRVIVTTRDKYLLESHGIERIYEMENSNSESNISTASDGKDNGDQLGEKNHFPRTSQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03578 418 PRINTS Disease resistance protein signature 329 343 - -
Aip05g03578 418 PRINTS Disease resistance protein signature 253 268 - -
Aip05g03578 418 Gene3D - 15 216 IPR035897 -
Aip05g03578 418 Pfam TIR domain 149 216 IPR000157 GO:0007165
Aip05g03578 418 Pfam TIR domain 22 120 IPR000157 GO:0007165
Aip05g03578 418 Gene3D - 217 380 IPR027417 -
Aip05g03578 418 MobiDBLite consensus disorder prediction 385 418 - -
Aip05g03578 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 391 IPR027417 -
Aip05g03578 418 Pfam NB-ARC domain 235 379 IPR002182 GO:0043531
Aip05g03578 418 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 31 391 IPR044974 GO:0006952
Aip05g03578 418 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 122 IPR035897 -
Aip05g03578 418 SMART till_3 21 192 IPR000157 GO:0007165
Aip05g03578 418 PANTHER ARCHAEAL ATPASE 31 391 - -
Aip05g03578 418 ProSiteProfiles TIR domain profile. 20 218 IPR000157 GO:0007165
Aip05g03578 418 CDD AAA 230 368 - -
Aip05g03578 418 MobiDBLite consensus disorder prediction 385 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03578 Aip-Chr5 143305874 143308101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03578 12 386 WRKY Transcription Factor Family AT4G12020 26.720 6.50e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03578 - - ahf:112751549 624.009