Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03089 ATGAGGTCTTCTTCTTCGAACACGATCAACATCGCCGCCAGCACACAGAGACTCGATGTCGATAATCGAATCGGCCTGCGACTCTATTATCGCATCGCTGATAACATCCTCAGACAGGCTGATATCTTTCGGACAGAGAGGAATATTATTGACTTATATGTCATGCTCCTAAGATTTTCTAGTTTGGCATCCGAGACAATACCACGACACCGAGATTATAGAACATCTCCACAAAGCAAAAAAGAATCATTGAAAAAGAAATTGATAATTTCCATGAATGAACTGGAGAAGTTGAAACCACTGGTACAACAGAAGATCAATGAGCTTAACAGTAGACATTCTTACCAACAAAATGAGCATGGAAAATTTCATTCAAATAATTTAATGGATTTTTCTCCAGTGAAAAAGCAAACTGTGGGCAGTTATGGCCAAATAAAGACAGTCAGACCAACTGCCATGGAATTTGGTTACCAAGGATCAAGGACCCAACAGTTCTCTTATACCAGGCCTGTCCAACAGCATTTGCAAAGACGATCTCTAAATCTTACGCCTGCAAAGGAGGAAACTCGCTCTAAACATTCTTTCCTTGGTCCCCACGGGCTTAATGGGCATTTGAGATTACCTACAAGTGATAAAGGGGTCAGATATCCATCTATCACAGATCTATCTCCAGTTGAAATACCAAGCCTACAACATTCTTTGGAAGATGGATGTCGTAATAAAAAAGACAATAGCATCACAGAAAACAAAAGATCAGATTTAGATTCAAATCTTGCCCAGAGCGTGGAATGCAATACCCAGCATTCTGAGGAACCTCCTTCTCTCATCTCTTTTGAAGAATCTGAAGCCCCTGCTCAAATCGGGGTTAAAGAATCTCCTTCTCTGATCTCTTTTGAAGCAACAAAACCCCCTGCCCAAATAGAAGTTGTCAGGCAGCCTTCTCCTCCACCTGTACTTGCTGAAGTACAGGATTTGGTCCCTGCAGTGTCACCTCATGTTGACGAGGCAGGATGCAAGGCAGATATTCCATCATCAGGTGGTTATGTTCATGCTGAGTCGCCTCTGCAGCTGCACGTTTCAACTTCTATGATGGAAAATTTTATGAAGCTTGCCAAGTCAAATACGGACAAAAATTTGGAGACTTGTGGTATCCTTGCTGGTTTGCTTAAAAACAGAAAATTTTATATTACTGCTCTAATAATCCCAAAGCAGGAGTCAACATCAGATTCTTGTCAGGCTACAAATGAAGAGGAAATATTTGAAGTGCAGGATAAACGATCTCTTTTCCCCCTTGGGTGGATACATACACATCCTACACAATCTTGTTTCATGTCATCAATTGATCTGCACACTCACTACTCATATCAGATTATGCTTCCAGAAGCCGTTGCAATAGTTATGGCACCAAGAGACAGTTCAAGAAAACATGGCATTTTTCGGTTGACAACCCCTGGTGGAATGAACGTCATCAAACAATGCCAGCACCGCGGCTTTCATCCACACAGTCAGCCTCCAGATGGTGGTCCTATTTACAACACTTGTACAGATGTTTACATGAATCCTGATTTAAAATTTGATGTAATTGATCTTCGGTGA 1596 0.4142 MRSSSSNTINIAASTQRLDVDNRIGLRLYYRIADNILRQADIFRTERNIIDLYVMLLRFSSLASETIPRHRDYRTSPQSKKESLKKKLIISMNELEKLKPLVQQKINELNSRHSYQQNEHGKFHSNNLMDFSPVKKQTVGSYGQIKTVRPTAMEFGYQGSRTQQFSYTRPVQQHLQRRSLNLTPAKEETRSKHSFLGPHGLNGHLRLPTSDKGVRYPSITDLSPVEIPSLQHSLEDGCRNKKDNSITENKRSDLDSNLAQSVECNTQHSEEPPSLISFEESEAPAQIGVKESPSLISFEATKPPAQIEVVRQPSPPPVLAEVQDLVPAVSPHVDEAGCKADIPSSGGYVHAESPLQLHVSTSMMENFMKLAKSNTDKNLETCGILAGLLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPEAVAIVMAPRDSSRKHGIFRLTTPGGMNVIKQCQHRGFHPHSQPPDGGPIYNTCTDVYMNPDLKFDVIDLR 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03089 531 PANTHER AMSH-LIKE PROTEASE 1 289 - -
Aip05g03089 531 PANTHER AMSH-LIKE PROTEASE 290 531 - -
Aip05g03089 531 MobiDBLite consensus disorder prediction 227 259 - -
Aip05g03089 531 MobiDBLite consensus disorder prediction 235 250 - -
Aip05g03089 531 CDD MPN_AMSH_like 356 531 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Aip05g03089 531 SUPERFAMILY JAB1/MPN domain 356 487 - -
Aip05g03089 531 Pfam USP8 dimerisation domain 7 100 IPR015063 -
Aip05g03089 531 ProSiteProfiles MPN domain profile. 357 487 IPR037518 -
Aip05g03089 531 SMART pad1_6 356 484 IPR000555 GO:0005515|GO:0008233|GO:0008237
Aip05g03089 531 SUPERFAMILY USP8 N-terminal domain-like 23 120 - -
Aip05g03089 531 Coils Coil 92 112 - -
Aip05g03089 531 Gene3D Cytidine Deaminase, domain 2 349 531 - -
Aip05g03089 531 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 354 460 IPR000555 GO:0005515|GO:0008233|GO:0008237
Aip05g03089 531 Gene3D - 2 128 - -
Aip05g03089 531 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 290 531 - -
Aip05g03089 531 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 289 - -
Aip05g03089 531 MobiDBLite consensus disorder prediction 184 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03089 Aip-Chr5 134131267 134136962 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03089 K11866 - gmx:100777366 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03089 05 134131267 134136962 Aip05g03089 05 134131267 134136962 ECH