Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03017 ATGGTGATCCATGGATTGAGCAATCTCAGTAATGGTCAACAAAGATTAGGCATAACTGAGCCTATTTCATTGGCTGGACCAACTGAGTATGATGTGATCAAGACCCGGGAACTTGAGAAGTACTTGCAAGATGCTGGATTATATGAGAGTCAGGAGGAGGCAGTGGTTAGGGAGGAAGTTCTTGGCAGGCTAGACCAGATTGTGAAGACATGGGTTAAAACCATAAGCCATGCAAAGGGACTCAATGATCAACTGGTGCATGAAGCAAATGCCAAGATTTTCACCTTTGGCTCATATCGGCTAGGGGTACATGGCCCCGGAGCTGATATAGACACTCTTTGTGTGGGACCTAGACATGCAACCCGAGAAGAGGATTTCTTTGGTGAGCTACATAAGATGCTATTGGAGATGCCACAGGTAACAGAGTTGCACCCTGTGCCTGACGCTCATGTCCCTGTGATGAAATTCAAGTTCAATGGAATTTCTATAGATCTCCTGTATGCAAGATTAGCTTTGTGGGTTATTCCTGAGGACTTAGATATATCGCAAGATTCAATATTGCAAAATGCAGATGAACAAACTGTTCTTAGTCTTAATGGTTGCAGAGTAACTGATCAAGTCTTACGTTTGGTTCCTAATATTCAGAATTTTCACACCACATTGAGATGCATGAGGTTTTGGGCAAAGCGTCGTGGTGTTTATTCAAATGTTTCAGGTTTTCTTGGTGGTATAAACTTGGCATTGCTTGTTGCCCGAATATGCCAGCTATATCCTAATGCACTGCCTAATATGTTAGTGTCTCGATTCTTTAGGGTATATACTCAGTGGCGGTGGCCTAATCCAGTCATGCTTTGTGCTATTGAAGAAGGATCTCTTGGACTTCCTATTTGGGATCCTAGAAGAAATCCCAGGGATAGATATCATTTGATGCCTATAATTACTCCTGCTTATCCTTGCATGAACTCTACCTACAATGTGACATCAAGTACTTTGCGTATTATGTCACAGGAATTTCAGAGGGGAAGTGAAATATGTGAGGAAATGGAGGCAGGAGATGCTGATTGGGACACCCTTTTTGAGCGTTATCCCTTTTTTGAAGCTTACAAGAATTATCTACGGATTGACATTGCTGCGGAGAATGCGGATGATCTCAGACAATGGAAGGGCTGGGTCGAATCTCGCCTCCGGCAGTTGACACTGAAGATTGAGAGGCACACTTATGGCATGCTTCAATGTCATCCACACCCTGGTGAATTTTCAGACAAATCTAGACCTTTCCATCATTGTTACTTTATGGGACTTCAGCGTAAGCAAGGAGTTCCAGTGAATGAAGGTGAACAATTTGATATAAGGCTAACCGTTGACGAATTCAAGCACTCTGTTAATGCATATACTCTATTGAAACCTGGAATGGGCATCCATGTTTCCCATGTGAAACGACGTAATATACCTAACTTTGTATTTCCTGGTGGTGTCCGACCTTCCCACCCATCTAAAATAACTTGGGACAGTAAACGAAGTTCTGAATTAAGGGTTTCTGGCCAGAATGGCCAAGCAGAAATGTCTCAAGGAGCTGTATCTGGAGCAGATGACGGGAGGAAGAGAAAACGATCGGAGGACAACATGGATGATAACTCGAAGGTTTCCAAGTCCTTAACATCTTTAACGCCCTTCAGCCGGGAAGTTCACGAAGATAGAACTTTCATTAGCGCTTCCAGTACTTGTTCTGTGAAGTTTGATGAGACTGAAGTTAACAATATGGGTGACCAAAAGAGTGAGAAACCTTCTTTACAATTTCCGTCTGGAGATAGTGAGACCAATGGATCATTGAGAATCAACAGAGAACTCGACCCTATACTTCCCGTTACTGATACATCTGTTTCTAAAGAAGAAAAGCTATCCAGTGACAAGATCATATCTGGTCCATATGAAGCACATCAACCTCAAGCATTTCCAGAAGAACCTGAAGAGCTTGAAGATAATAATGCGGGTAGTAATCAAGTTAGAGAGAATGGTCGGGATATGAAAAGAGACAACTCGGACTCTTCAATCTCAAAGTTGGCTGTCTCGGAACATCCAGTTATTTCCAAGGAAACATGTTCGACTCAGTTATGCACTAATGGGGGCTTGGAGGAGCTTGAGAAGAAGCCTCTTATCAGGTTGAACTTCACCTCTTTAGGGAAAGCTTCTGACAAAGAAGCTCCCTTCTCCATCCTCTTCCTTCTTTTCCTCCATGGCGCCCTGCCAAGGTCACTGCAGCATTCGTCGCGCGCCTCACCCAGCCAAGGAGAACGTCGTCACGTCAGACAGCGTCGCCGTCTTTCTCGTTCTTCGTCACCGTCGTCAGCCTTTCCCTTCCGGAAGCTTTCTTCCGCGGAGTCACACTGCAAAGCTGCCTGCTCTCCGAAGTGCGGCCTCTGTCGCGACTCGTTAGTTCGGAGGATGAAGATCTGCATAGTGTCCTCGCCGGAGCTGCATAGTGTTTCGGCTAGATGTATGGCTTTGCCGGAGACGACCAACAAGGAAGGATCGAAGCGGCGTGGGGATAGTGGCGAGAGGATGACGAAGGAGATGGTCGATGGTGTTACGGGTCGGGCGGGTTAG 2604 0.452 MVIHGLSNLSNGQQRLGITEPISLAGPTEYDVIKTRELEKYLQDAGLYESQEEAVVREEVLGRLDQIVKTWVKTISHAKGLNDQLVHEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHKMLLEMPQVTELHPVPDAHVPVMKFKFNGISIDLLYARLALWVIPEDLDISQDSILQNADEQTVLSLNGCRVTDQVLRLVPNIQNFHTTLRCMRFWAKRRGVYSNVSGFLGGINLALLVARICQLYPNALPNMLVSRFFRVYTQWRWPNPVMLCAIEEGSLGLPIWDPRRNPRDRYHLMPIITPAYPCMNSTYNVTSSTLRIMSQEFQRGSEICEEMEAGDADWDTLFERYPFFEAYKNYLRIDIAAENADDLRQWKGWVESRLRQLTLKIERHTYGMLQCHPHPGEFSDKSRPFHHCYFMGLQRKQGVPVNEGEQFDIRLTVDEFKHSVNAYTLLKPGMGIHVSHVKRRNIPNFVFPGGVRPSHPSKITWDSKRSSELRVSGQNGQAEMSQGAVSGADDGRKRKRSEDNMDDNSKVSKSLTSLTPFSREVHEDRTFISASSTCSVKFDETEVNNMGDQKSEKPSLQFPSGDSETNGSLRINRELDPILPVTDTSVSKEEKLSSDKIISGPYEAHQPQAFPEEPEELEDNNAGSNQVRENGRDMKRDNSDSSISKLAVSEHPVISKETCSTQLCTNGGLEELEKKPLIRLNFTSLGKASDKEAPFSILFLLFLHGALPRSLQHSSRASPSQGERRHVRQRRRLSRSSSPSSAFPFRKLSSAESHCKAACSPKCGLCRDSLVRRMKICIVSSPELHSVSARCMALPETTNKEGSKRRGDSGERMTKEMVDGVTGRAG 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03017 867 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Aip05g03017 867 MobiDBLite consensus disorder prediction 497 552 - -
Aip05g03017 867 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 4 686 - -
Aip05g03017 867 MobiDBLite consensus disorder prediction 840 859 - -
Aip05g03017 867 MobiDBLite consensus disorder prediction 753 785 - -
Aip05g03017 867 MobiDBLite consensus disorder prediction 584 686 - -
Aip05g03017 867 Pfam Poly(A) polymerase central domain 17 361 IPR007012 GO:0004652|GO:0043631
Aip05g03017 867 Gene3D Beta Polymerase, domain 2 49 205 IPR043519 -
Aip05g03017 867 Gene3D Poly(A) polymerase predicted RNA binding domain 363 478 - -
Aip05g03017 867 Gene3D - 17 359 - -
Aip05g03017 867 PANTHER POLY A POLYMERASE 4 686 - -
Aip05g03017 867 CDD NT_PAP_TUTase 56 211 - -
Aip05g03017 867 Pfam Nucleotidyltransferase domain 90 171 IPR002934 GO:0016779
Aip05g03017 867 MobiDBLite consensus disorder prediction 529 546 - -
Aip05g03017 867 Pfam Poly(A) polymerase predicted RNA binding domain 423 494 IPR007010 GO:0003723|GO:0043631
Aip05g03017 867 Pfam Poly(A) polymerase predicted RNA binding domain 364 422 IPR007010 GO:0003723|GO:0043631
Aip05g03017 867 SUPERFAMILY Nucleotidyltransferase 17 210 IPR043519 -
Aip05g03017 867 MobiDBLite consensus disorder prediction 507 523 - -
Aip05g03017 867 MobiDBLite consensus disorder prediction 584 611 - -
Aip05g03017 867 SUPERFAMILY PAP/OAS1 substrate-binding domain 212 360 - -
Aip05g03017 867 MobiDBLite consensus disorder prediction 838 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03017 Aip-Chr5 132459246 132470321 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03017 K14376 - gmx:100816915 1183.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03017 05 132459246 132470321 Aip05g03017 05 132459246 132470321 ECH