Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02984 ATGGCAGACGGACTTGTTCTCCGCGGCACCATGCGAGCCCACACGGACTCCGTCACAGCCATCGCAACCCCAATCGACAACTCCGACATGATCGTAACCGCCTCACGCGACAAGTCCATCATCCTCTGGCACCTCACCAAGGAGGAGCGCACCTACGGCGTCCCCCGCCGCAGGCTAACGGGTCATTCTCACTTCGTTCAGGACGTCGTTCTCTCTTCCGACGGCCAGTTCGCTCTCTCCGGCTCCTGGGACGGCGAGCTCCGCCTCTGGGACCTCGCCGCCGGAAAGTCCGCTCGCCGATTCGTCGGACACACAAAGGACGTTATGTCTGTTGCGTTCTCGGTTGATAACCGTCAGATCGTGTCGGCGTCTCGTGACCGTACGATTAAGTTGTGGAACACTCTTGGTGAGTGCAAATACACGATCCAGGACGGTGATGCGCATTCCGATTGGGTTTCTTGTGTTAGGTTTAGCCCTAACACTGTGCACCCTACCATTGTTTCTGCGTCTTGGGACAG 518 0.5811 MADGLVLRGTMRAHTDSVTAIATPIDNSDMIVTASRDKSIILWHLTKEERTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAAGKSARRFVGHTKDVMSVAFSVDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPNTVHPTIVSASWD 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02984 172 SMART WD40_4 94 133 IPR001680 GO:0005515
Aip05g02984 172 SMART WD40_4 52 91 IPR001680 GO:0005515
Aip05g02984 172 SMART WD40_4 4 44 IPR001680 GO:0005515
Aip05g02984 172 SMART WD40_4 135 172 IPR001680 GO:0005515
Aip05g02984 172 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Aip05g02984 172 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Aip05g02984 172 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
Aip05g02984 172 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Aip05g02984 172 CDD WD40 7 172 - -
Aip05g02984 172 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
Aip05g02984 172 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Aip05g02984 172 PRINTS G protein beta WD-40 repeat signature 31 45 IPR020472 -
Aip05g02984 172 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Aip05g02984 172 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 92 - -
Aip05g02984 172 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Aip05g02984 172 SUPERFAMILY WD40 repeat-like 5 172 IPR036322 GO:0005515
Aip05g02984 172 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-LIKE PROTEIN 3 172 - -
Aip05g02984 172 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Aip05g02984 172 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Aip05g02984 172 Gene3D - 4 172 IPR015943 GO:0005515
Aip05g02984 172 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 3 172 IPR045223 GO:0015935|GO:0043022
Aip05g02984 172 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02984 Aip-Chr5 132060905 132061422 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02984 7 160 Acyl Lipid Metabolism Gene Families AT3G18860 30.189 1.20e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02984 K14753 - pvy:116127548 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g02984 05 132060905 132061422 Aip05g02984 05 132060905 132061422 ECH