Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01785 ATGACTGGTGGTAGTGGATACATGGTAGAAGTTACTGGACTTTCGCCAAAAACCACCGAGAAAGATCTCCACCATTTCTTCGCTTTCTCCGGCGCGATCGAGCACGTTGAAATCGTTAGGTCTGGTGATTGTGCTTGTACTGCATATGTGACATTCAAAGATGCATATTCTCAAGAAACTGCTTGCTTGCTTAGTGGAGCCACTATTTTAGATCAACGTGTATGCATAACGCGTTGGGGGCAGTGCGATGATGGCTATGGTTTTTGGAATCAGCCTTCCTACAACCGTGACGATGAGACTGCTTCAAATACACAACATAGAGACCAATTTGTTTCCTCTGCTGGAGAAGCAGTTACTGCGGCTCAAGAAGTTGTGAAGACCATGCTAGCAAAGGGATATGTTCTCAGTAAGGACGCATTGGCTAAGGCTAGAGAGTTCGACGAGTCTCATCAGGTTTCTGCGACTGCAACAGCGAAAGTTTCTGAACTGAGCGAGAGACTTCGCCTCGCTGACAAGATATCAACAGGTGTTGGAGCTGTGAAATCTGTGGATCAGAAATATAATATCTCTGAAATAGCCAGGTCAGCTGCATCTGCAACTGGAAGATCGGTGGCAGCCGCCGGGGACTCTGTAGTAAATAGTAGCTATTTTTCGAAGGGAGCATTGTGGCTGTCAGGTGCTCTAACCCGAGCGGCTCATGTTGCTTCTGACTTGGGTGCTCGTGGCGATGGTCAGCACTGA 741 0.4764 MTGGSGYMVEVTGLSPKTTEKDLHHFFAFSGAIEHVEIVRSGDCACTAYVTFKDAYSQETACLLSGATILDQRVCITRWGQCDDGYGFWNQPSYNRDDETASNTQHRDQFVSSAGEAVTAAQEVVKTMLAKGYVLSKDALAKAREFDESHQVSATATAKVSELSERLRLADKISTGVGAVKSVDQKYNISEIARSAASATGRSVAAAGDSVVNSSYFSKGALWLSGALTRAAHVASDLGARGDGQH 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01785 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 72 IPR000504 GO:0003723
Aip05g01785 246 CDD RRM_Vip1_like 9 77 IPR034360 -
Aip05g01785 246 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 5 243 - -
Aip05g01785 246 SUPERFAMILY RNA-binding domain, RBD 7 79 IPR035979 GO:0003676
Aip05g01785 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 81 IPR000504 GO:0003723
Aip05g01785 246 Gene3D - 4 81 IPR012677 -
Aip05g01785 246 SMART rrm1_1 8 78 IPR000504 GO:0003723
Aip05g01785 246 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01785 Aip-Chr5 38498362 38501147 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01785 - - gmx:100805907 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01785 05 38498362 38501147 Aip05g01785 05 38498362 38501147 ECH