Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01715 ATGGAAGAAGAAGAACGAGTGTGGAGTTGGGGTGCTGGGACGGAGGGGCAGTTGGGTAATTGCAGCCTTGAAGACGAGGTCAGTCCTCAGCTCATTCGCCAACCCCCTCTTTCTGTCTCCAACGTCTCCTCCCTTGCGTGCGGCGCCGCCCACGTCATCGCCATCACCTCCAGTGGGAAGGTACTTTCATGGGGCAGGGGCAGTTCTGGACAACTAGGCCATGGGGAGTTTGTTAACAACTCCTTGTATCCTAAGCCTGTAACATCACTGGACCCTTACTTCATAACCAATGTCTCTGCTGGTTGGAGTCACTCCGCTTTTGTTTCAGATACCGGATGCTTGTTCACTTGCGGCGATGCTTCATTCGGTCAGCTTGGCCATGGCGATTACACATCACGTTGCTCTCCTGCCAAGGTATCATCCTTTGATAATCGCCGTGTTGCCAAGGTAGCATGTGGCATGCGCCATTCCCTCGTTTTGTTGGAAGATTGTTCATCAAATCAAGTTTATGGATTTGGGTCTGGGAAGCGCGGTCAATTGGGTGTCTCCAAAGATAGGGTCAAATCTATTAATCTTCCTCAAGTTGTTAGTGGATTTGAAGATGTTGAGACAGTCGACATTGCTGCAAATGGAGATCATAGTGCTGCAATATCTGTTGATGGAAATCTTTACATATGGGGAAGAGGATTCAAGGGCTATGAAGATGCTAATTCTCCTCGACGATTGAACTCTACCTTGAGTTTTACCAAAGTTGCTCTAGGATGGAACCATGCTTTAACTTTGACTGCTGCAGGTGAAGTCTATATGATTGGTGGCAACCATCTTGGAGTGCTTAGTAATCATTGGAGTACGAGCTCAGCAAAACAGTTACATGATTTAAGAGAAGCCAATATGGAGAAAGTCCCTGGCCTTGATGATACAAAGGTTGTTGATATTGCCGCTGGTGCCGAGCACTCCATTCTTGTCACAGAGAATGGAGAAATAAAGACATGGGGTTGGGGTGAGCATGGTCAACTTGGCCTGGGGGATCCTTGTGACAGGGCCCGTCCTGTTACAGTAAATCTTGGTTATGATATGGATGGAGTTTCCTCTATCAGAGTCTACTGTGGAAGTGGCTTTACCTTTGCTTTAACCAAGCCCTAG 1143 0.4768 MEEEERVWSWGAGTEGQLGNCSLEDEVSPQLIRQPPLSVSNVSSLACGAAHVIAITSSGKVLSWGRGSSGQLGHGEFVNNSLYPKPVTSLDPYFITNVSAGWSHSAFVSDTGCLFTCGDASFGQLGHGDYTSRCSPAKVSSFDNRRVAKVACGMRHSLVLLEDCSSNQVYGFGSGKRGQLGVSKDRVKSINLPQVVSGFEDVETVDIAANGDHSAAISVDGNLYIWGRGFKGYEDANSPRRLNSTLSFTKVALGWNHALTLTAAGEVYMIGGNHLGVLSNHWSTSSAKQLHDLREANMEKVPGLDDTKVVDIAAGAEHSILVTENGEIKTWGWGEHGQLGLGDPCDRARPVTVNLGYDMDGVSSIRVYCGSGFTFALTKP 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01715 380 SUPERFAMILY RCC1/BLIP-II 5 278 IPR009091 -
Aip05g01715 380 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 221 264 IPR000408 -
Aip05g01715 380 PANTHER OS01G0777800 PROTEIN 7 374 - -
Aip05g01715 380 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 59 111 IPR000408 -
Aip05g01715 380 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 5 58 IPR000408 -
Aip05g01715 380 PRINTS Chromosome condensation regulator RCC1 signature 6 22 IPR000408 -
Aip05g01715 380 PRINTS Chromosome condensation regulator RCC1 signature 42 55 IPR000408 -
Aip05g01715 380 PRINTS Chromosome condensation regulator RCC1 signature 61 77 IPR000408 -
Aip05g01715 380 PRINTS Chromosome condensation regulator RCC1 signature 150 166 IPR000408 -
Aip05g01715 380 PRINTS Chromosome condensation regulator RCC1 signature 254 272 IPR000408 -
Aip05g01715 380 PRINTS Chromosome condensation regulator RCC1 signature 321 342 IPR000408 -
Aip05g01715 380 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 150 160 IPR000408 -
Aip05g01715 380 Gene3D - 234 379 IPR009091 -
Aip05g01715 380 Gene3D - 1 233 IPR009091 -
Aip05g01715 380 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 167 220 IPR000408 -
Aip05g01715 380 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 7 374 - -
Aip05g01715 380 Pfam Regulator of chromosome condensation (RCC1) repeat 112 160 IPR000408 -
Aip05g01715 380 Pfam Regulator of chromosome condensation (RCC1) repeat 168 217 IPR000408 -
Aip05g01715 380 Pfam Regulator of chromosome condensation (RCC1) repeat 6 55 IPR000408 -
Aip05g01715 380 Pfam Regulator of chromosome condensation (RCC1) repeat 326 377 IPR000408 -
Aip05g01715 380 Pfam Regulator of chromosome condensation (RCC1) repeat 58 108 IPR000408 -
Aip05g01715 380 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 98 108 IPR000408 -
Aip05g01715 380 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 112 163 IPR000408 -
Aip05g01715 380 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 312 322 IPR000408 -
Aip05g01715 380 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 326 380 IPR000408 -
Aip05g01715 380 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 325 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01715 Aip-Chr5 33002615 33005700 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01715 - - adu:107490763 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01715 05 33002615 33005700 Aip05g01715 05 33002615 33005700 ECH