Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01608 ATGTCTCCCCCTCCTTCTTCTTCTCCACTCCGTTTCTTCTTTCTTCTTTTGTGGATTCTAGGGTTTTCGAACTTCGGCAGCGCTCTCAAGGTTCCCTTCAGAGTCAAAGATGTGCTCCCAGTTCTCCCTCACGGGATATCGTGGCCTGTTCTTAACAATTTCCACAGTGCCGTCGATTTGCTCCCTTCTTTCGTTGGATCGGTGAGTCCCACCAACGGTTCTATTCAGTGGAAAGGTGCTTGCTTTTTTGATAATGAAGCGAAACTGGAGTTCACCACAGGTGACAGGGATGATTCTGATTTGGGGGGTGGCGTTCTCTATCTCAAGACAGCAGCTGCACACAGCTGGACCTGTATGGACCTCTATGTTTTCGCGACACCATACAGGATAACATGGGACTACTACTTCTCTGCTCGAGAACATACCTTGAAGTTTGATTCATGGGAAGAGCCTGCAGAGTTGGAATATGTAAAGCAGCATGGGGTTTCTGTGTTTCTCATGCCATCGGGGATGCTGGGGACACTGCTTTCTTTAATTGATGTTTTGCCTCTATTCTCCAACACTGCATGGGGTCAAAATGCCAACTTAGAGTTCCTAAGGAAACACATGGGAGCTACATTCGAGAAACGCGATCAGCCTTGGCGTGCAACGATTGATCCTGCAGATGTTCATTCTGGAGACTTTTTAGCTGTATCAAAGATCCGTGGTAGGTGGGGAGGTTTTGAGACCTTAGAAAAGTGGGTAACTGGTGCTTTTGCCGGTCATACTGCAGTTTGCTTGAAGGATGAAATGGGCAATTTATGGGTTGGTGAATCAGGGCATGAGAATGAAAAGGGTGAAGAAATTATAGTGGTTATTCCATGGCTTGAATGGTGGGAATCAGCTCTCAAAGATGATTCTAACCCACAGATAGCATTGCTTCCACTTCATCCAGAGCTGCGTGCCAAATTCAACACCACTGCAGCATGGGAGTATGCTCGAAGCATGTCTGGCAAGCCATATGGTTATCATAATATGATATTTAGTTGGATTGACACAGTAGCTGACAACTATCCACCACCTCTTGATGCTCACTTGGTAATTTCTGTCATGTCTATGTGGACTAGAATGCAGCCAGCTTATGCTGCAAATATGTGGAATGAAGCACTGAATAAGCGGCTAGGGACTGAGGGCTTGGATTTGCATGACATTCTACTCGAGACTGAGAAGCGTGGGATAGCATTTGATCAATTACTTACCATTCCAGAACAAGATGAATGGGTGTACAGCGATGGCAAGTCAACAACATGTGTTGCCTTTATTCTTTCGATGTATAAAGAGGCTGGGATTTTCAGCCCCTTTTCTAGCTCCATTCAAGTAACTGAATTCACTATTCGGGATGCATACATGCTTAAGATTTTCGAGGATAACCAAACACGCCTTCCAAGATGGTGCAACAATGAGAATGACAAGCTCCCATTCTGCCAGATTCTGGACCCTCACAATGTTAGCATTGTATATACGACTTTATTTTGGTGGGTGTGCCGTGTGACTTTAGATTTTAGAGCAATGAATCCAACGCTTGCTGCATCCTCGGGAAGTCGGGGTGTAACAAATGCAAAACACAATGCCAATTGTCAAACGGCGACGTTTCCAAGAGCGACCAATCTTCCGGCTCTTTGCTTATTCCTACTTGTCTCGGCTCGTATGTTCCCAGATCCATCATCTATTCCGGGGTGGCTCTCCAGCCACGCGCCGCCTGGCGTTTGGGACTCGTACCGGAACTTCACCGGCTGCCAGCGTGGCAAAACATATGAAGGCCTATCCAAAATCAAAGACTACTTCCACCACTTCGGGTACATCCCCAACGCACCGCCGTCCAACTTCACTGACGACTTCGACGACGCGCTGGAGGCTGCCGTCAAAATCTACCAGAAGAATTTCAACCTCAACGTCACCGGCGAGCTCGACGACGCAACTCTTAGCCAGATCGTCCGGCCACGGTGCGGCGTCGCCGACATCATCAACGGCACGACGACAATGAACTCGGGCAAGTCCGACACCAACACGACCGCCACAAGCAGCACGAAGCTGAAATTCCACACCGTCGGACACTACACGTTCTTCGACGGGAAGCCGCGGTGGCCGGAGGGAACGACGGAGTTGACCTACGCGTTCGATCCAGGCAACAACCTCGAAGACGTCGTTAAGAACGTTTTCGCCAGAGCTTTTTCGCGTTGGTCGGAGGTAACGACGATAAACTTCACTGAAACGACGTCGTTTTCAGACGCCGACGTGAAGATAGGGTTTTACACGGGGAACCACGGAGACGGAGAACCGTTCGACGGCGTTCTTGGAACATTGGCGCACGCGTTCTCTCCAACGGACGGGAGGTTCCACCTTGACGGTGCGGAGGACTGGGTTGCCTCCGGCGATGTGACGACGGCGTCGCTGTCGACGGCGGTGGATCTTGAATCTGTTGCGGTGCATGAAATAGGGCACTTGTTAGGGTTGGGTCACACTTCTGTGAAAGAAGCTATAATGTACCCTACGATAACTGCGAAAACGAGGAAGGTGAAGCTTATGGATGATGACATTGCTGGTGTTCAGAACCTTTATGGTTCAAATCCTCACTATACTGATACGACTACCACTTCTTCGCGTGAGACCAGCAATGGCGGAAGGCACGTGGGGTCCATGTGGGGTTTGGTGATTCTATTGGTCGTTGGGGTTGCACATTTGGTTTTGGTTGCCGAGGCTGGAGCAGGGGCTTCTGGGGCTAGAGTAGGGGCTGTCGGGCTTGGAGAAGAGGCTGGTGTTGTAGAACTACTAGATGCAGTAGCCCTTGTCAGCCTTCGTGAGGCCATTATGTAA 2853 0.4946 MSPPPSSSPLRFFFLLLWILGFSNFGSALKVPFRVKDVLPVLPHGISWPVLNNFHSAVDLLPSFVGSVSPTNGSIQWKGACFFDNEAKLEFTTGDRDDSDLGGGVLYLKTAAAHSWTCMDLYVFATPYRITWDYYFSAREHTLKFDSWEEPAELEYVKQHGVSVFLMPSGMLGTLLSLIDVLPLFSNTAWGQNANLEFLRKHMGATFEKRDQPWRATIDPADVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDEMGNLWVGESGHENEKGEEIIVVIPWLEWWESALKDDSNPQIALLPLHPELRAKFNTTAAWEYARSMSGKPYGYHNMIFSWIDTVADNYPPPLDAHLVISVMSMWTRMQPAYAANMWNEALNKRLGTEGLDLHDILLETEKRGIAFDQLLTIPEQDEWVYSDGKSTTCVAFILSMYKEAGIFSPFSSSIQVTEFTIRDAYMLKIFEDNQTRLPRWCNNENDKLPFCQILDPHNVSIVYTTLFWWVCRVTLDFRAMNPTLAASSGSRGVTNAKHNANCQTATFPRATNLPALCLFLLVSARMFPDPSSIPGWLSSHAPPGVWDSYRNFTGCQRGKTYEGLSKIKDYFHHFGYIPNAPPSNFTDDFDDALEAAVKIYQKNFNLNVTGELDDATLSQIVRPRCGVADIINGTTTMNSGKSDTNTTATSSTKLKFHTVGHYTFFDGKPRWPEGTTELTYAFDPGNNLEDVVKNVFARAFSRWSEVTTINFTETTSFSDADVKIGFYTGNHGDGEPFDGVLGTLAHAFSPTDGRFHLDGAEDWVASGDVTTASLSTAVDLESVAVHEIGHLLGLGHTSVKEAIMYPTITAKTRKVKLMDDDIAGVQNLYGSNPHYTDTTTTSSRETSNGGRHVGSMWGLVILLVVGVAHLVLVAEAGAGASGARVGAVGLGEEAGVVELLDAVALVSLREAIM 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01608 950 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 702 871 - -
Aip05g01608 950 Pfam Matrixin 712 867 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Aip05g01608 950 Gene3D Collagenase (Catalytic Domain) 589 873 IPR024079 GO:0008237
Aip05g01608 950 PANTHER ZINC FINGER MYND DOMAIN PROTEIN 20 495 - -
Aip05g01608 950 Pfam Putative peptidoglycan binding domain 600 656 IPR002477 -
Aip05g01608 950 PRINTS Matrixin signature 733 748 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aip05g01608 950 PRINTS Matrixin signature 854 867 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aip05g01608 950 PRINTS Matrixin signature 820 845 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aip05g01608 950 PRINTS Matrixin signature 757 785 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aip05g01608 950 PRINTS Matrixin signature 657 670 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aip05g01608 950 PANTHER OS01G0793500 PROTEIN 20 495 - -
Aip05g01608 950 CDD ZnMc_MMP 707 867 IPR033739 GO:0008237|GO:0008270
Aip05g01608 950 SMART col_5 704 868 IPR006026 GO:0006508|GO:0008237|GO:0008270
Aip05g01608 950 SUPERFAMILY PGBD-like 604 667 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01608 Aip-Chr5 28913835 28924384 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01608 - - gmx:100779863 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01608 05 28913835 28924384 Aip05g01608 05 28913835 28924384 ECH