Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01568 ATGCTCCGTTCAGCTTTGCTTCCGGCCCCCTACAATTTTTTGCCGGTTCGAGTGAGAACCGGCACGTGCCATTCCTTCGCTCTCGCACGTGCCTCTCAGGCTATTGTCTCCCCACTCTTTTCGCGCTTTGGTCTCCACTTCCATCGGTTCCGACAACCCCGTGTGAGTTTACGCGCCGCGCGTCGCTCCCCTGTCACATCTTCGAGGAGGCGACGGCGTCGTGGCACGAAAACGAACGACGATAAATTCGATTACTACGACGACGACGACGAAGACTTTGAGGACGACGACGTCGTTTTGGGCGTCGATAATGAGTACTACGACGACGATGATGATGAAGACGAAGACGAAGACGAAGAAGGTGGTGATGAAGAGGGAATGATGCCGTTTGAGAAGATGAGGAAGTGGTTGAAGCACAAACCCAGAGGGTTCGGGGAAGGGAAAGTGTATGATACTTCCGTTGAGGACAAGCTGCTCGACGAAATGCGTCAGAGCAGAGAAGCACAAGCTGCTAACTTGAAGAAGCTCAAGAGCGGTGTCGTTAACTCCAAAAAGAGTGAAGAAAAGAAGAAAGATGCCCAAGTTGTTCCTATTGGTGGTCGAGTGCGCTTGGTGAACCTGCCGAAAAAGAAGAACATTCATAGGGATCTGAAATCTTCATTTGAAGGGATTCCAGGCATAGTGAATATCGTCCCGGAAGTTATTGGAAACAAGAAGACACGGGACCCTATTTGCAAGGGTTTTGCTTTTGTTGATTTCAAGTGTGAAGCAGATGCAGTTAGGTTTATAGAGCTATATTCTGGACAAAGTATTGCTTTTGGCAAGATTCAGAAGCCAATAAAATGTGAATTTGTAAATGCACATTCTTCCTCTCCTGTTTCTCCGAAATCAAGTGCAAATCTCAACACTACTCCACTTCTCATGGTCTCTGGTGTTGAAGAGGACTCAAATGAGGTTTCGAACGTGAAGGATTCTGCCCTTAGTTCTTGGGATGGGACCACTTCGGATGATTCAGATGAAGCAGACAATCAAATATACGGAGAAGGAGAAGAAGAGAAGGGTTCTGTAGAGGATCAGGATGCCGCCACTGCTTTCATTGATGACGATGATGATGATAGTGTGGAAATGCAGATCAATTCCGAAATTGGTTCACTTTCCTTAGAGCAGATAGACAGAAACCCTACAGCTGAACCAAATTCATCTGCTGATGTTGGACAAGAGAGCGTGCAGAAGAAAAAGCGAGCTAAGAAACAGAAAGGCAAGAAGGTTCCAAAGTTAGATGTTCCTGGATCCGCAAAGAGGTTAAAGATCAAGGAAAAGGCTGTACTAAGTGATGTTTTCGCCAAGTATGGATTAAAAGCTGCCGTAGCTGCTTCCAAGGAAAACTTCGGGAGCAAGAAAAGCACGGTTTATGTTCTGGCCCCCTTCAGAACGCTTTCGAGGCAGTGGCTGAGTGACACGCACACTTTGACATTCTCCCAAGTCCCAAACCGTGGCATTCTCCAACCTCCACGCAGCCCAAAAAAAATGAACATTGTGCTTAAACGAGGGCTCCGAAGCTTATCAACGACTAAAATCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCGCTTTCTATCTTTGAAACCCTCCTCCAACTACGTCGTCCCCAGCACCGCGGCCAAGATCGCCGACGCTGACGATGACGACGAAGCCGGAGATGATGTCACTCGTTCGCGCGGCTCTTCATCTTCCATTGTCGAACCACCTGTCACCCCAACCCTCCTTCAGCCGAGAGTCGTGGTTTACGACGGAGTTTGCCATCTCTGTCACGGAGGAGTGAAATGGGTAATCAGGGCAGACAAGGACAAAAAGATAAAATTCTGTTGTGTTCAGTCTGAAGCCGCGGAGCCCTATTTGAGAGCATGTGGTCTTGAAAGAGAGGATGTACTCCGCCGCTTTTTATTTGTTGAAGGCCTCAACGCATATTCTCAGGGATCTACTGCTGCATTGCGAGTACTATCATACTTGCCACTACCTTACTCTGCTTTGAGCACACTCTGGGTGATTCCAACTCCAATCAGGGATGCGGTCTATGATTATGTGGCGAAAAAGCGGTATGAATGGTTTGGGAAGGCTGAAGATTGTTTGGTTTTGCAAGAGAAAGAGCTGCTTGAGCGTTTCATAGATAGGGAAGAAATGATGGGCCGAGATCAACATTTGTAG 2262 0.4589 MLRSALLPAPYNFLPVRVRTGTCHSFALARASQAIVSPLFSRFGLHFHRFRQPRVSLRAARRSPVTSSRRRRRRGTKTNDDKFDYYDDDDEDFEDDDVVLGVDNEYYDDDDDEDEDEDEEGGDEEGMMPFEKMRKWLKHKPRGFGEGKVYDTSVEDKLLDEMRQSREAQAANLKKLKSGVVNSKKSEEKKKDAQVVPIGGRVRLVNLPKKKNIHRDLKSSFEGIPGIVNIVPEVIGNKKTRDPICKGFAFVDFKCEADAVRFIELYSGQSIAFGKIQKPIKCEFVNAHSSSPVSPKSSANLNTTPLLMVSGVEEDSNEVSNVKDSALSSWDGTTSDDSDEADNQIYGEGEEEKGSVEDQDAATAFIDDDDDDSVEMQINSEIGSLSLEQIDRNPTAEPNSSADVGQESVQKKKRAKKQKGKKVPKLDVPGSAKRLKIKEKAVLSDVFAKYGLKAAVAASKENFGSKKSTVYVLAPFRTLSRQWLSDTHTLTFSQVPNRGILQPPRSPKKMNIVLKRGLRSLSTTKITXXXXXXXXXXXXXXXXXXXXXXXXXXXLRFLSLKPSSNYVVPSTAAKIADADDDDEAGDDVTRSRGSSSSIVEPPVTPTLLQPRVVVYDGVCHLCHGGVKWVIRADKDKKIKFCCVQSEAAEPYLRACGLEREDVLRRFLFVEGLNAYSQGSTAALRVLSYLPLPYSALSTLWVIPTPIRDAVYDYVAKKRYEWFGKAEDCLVLQEKELLERFIDREEMMGRDQHL 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01568 753 MobiDBLite consensus disorder prediction 58 127 - -
Aip05g01568 753 MobiDBLite consensus disorder prediction 362 376 - -
Aip05g01568 753 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 287 IPR000504 GO:0003723
Aip05g01568 753 Gene3D - 148 284 IPR012677 -
Aip05g01568 753 MobiDBLite consensus disorder prediction 287 306 - -
Aip05g01568 753 MobiDBLite consensus disorder prediction 312 334 - -
Aip05g01568 753 SUPERFAMILY RNA-binding domain, RBD 193 291 IPR035979 GO:0003676
Aip05g01568 753 MobiDBLite consensus disorder prediction 84 125 - -
Aip05g01568 753 MobiDBLite consensus disorder prediction 312 427 - -
Aip05g01568 753 Pfam DCC1-like thiol-disulfide oxidoreductase 613 724 IPR007263 GO:0015035
Aip05g01568 753 MobiDBLite consensus disorder prediction 578 602 - -
Aip05g01568 753 MobiDBLite consensus disorder prediction 377 406 - -
Aip05g01568 753 CDD RRM_SF 202 277 - -
Aip05g01568 753 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 16 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01568 Aip-Chr5 27136594 27143931 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01568 - - aip:107643503 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01568 05 27136594 27143931 Aip05g01568 05 27136594 27143931 ECH