Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01528 ATGGTGCCCCACCCCAAGGACGAGGCGTACTTGAACGCCGCCATTCCGAAGCGTATCAAGATGTTCGAGTCCATCCAGGCCGAGCAGAAAACCCAGCGCCTCTCACTGTCGCCGGATCCAATCAAGGTCACACTTCCCGACGGCACGGTCAAGGACGCCTCCAAGTGGCAAACAACGCCGTTCGATGTGGCGAAAGAGATTTCTAAGAACCTCGCCAACAACGCACTCATCGCGAGGGTCAATGGTGTGCTATGGGACATGGCCAGGCCTCTCGAGCAGGATTGCGAACTCAGGATCTACAAGTTCGAAGACGACGAAGGCCGCGATACGTTCTGGCATTCTAGCGCTCACATTCTTGGCCAGTCGCTTGAGATGGAGTACGGATGCAAGCTCTGCATTGGGCCTTGTACTACAAGAGGAGAGGGTTTCTATTATGATGCGTTTTATGGTGACTTGGGATTGAATGATGATCATTTCAAGCAAATTGAGGCTGGGGCGTTGAAGGCAGCTGGGGAGAAACAACCTTTTGAGCGCATTGAAGTAACACGTGATCAAGCACTTGAGATGTTTTCAGATAATAAGTTCAAGGTTGAAATTATCAATGATTTGCCTGCTGATAAAACTATCACAGTATACAGATGTGGTCCACTAGTAGATCTGTGTCGTGGACCACATATACCCAATACTTCCTTTGTTAAGGCAATTGCCTGTTTGAAGGCTTCTTCAGCATATTGGAGGGGGAACAAAGATCGGGATACTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAGAGTTTAAAGGAATATTTGCTTAGGCTGGAGGAGGCTAAAAAGTATGATCACAGGATTTTGGGAGTGAAACAGGAGCTTATTTTTCATCATGAATGGAGCCCAGGAAGCTGGTTTTTCCTTCCACATGGTGCACTAGTATACAACAAATTGATAGATTTCATACGGAGTCAATACAGAGTCAGGCGATATCGAGAGGTCATATCTCCAAATGTATTTAACATGGATCTCTGGGAGCAATCTGGTCATGCTGCAAATTATAAAGAGAACATGTTTACCTTGGAGATTGAAAAGCACGAATTTGGGCTGAAACCAATGAATTGCCCAGGGCACTGCTTGGCCTTCAAGCAAAGAGTTCGCTCGTACAGGGAACTTCCTCTTCGCATGGCTGATTTTGGGGTCTTGCATAGAAATGAGGCTAGTGGTGCTTTGAGTGGATTGACGCGTGTTAGGAGATTTCAGCAGGATGATGCACATATTTTTTGCAGGGAGTCTCAGATAAAGGATGAAGTTAGAGAAGCCTTGAAGTTCATCGATTATGTCTATGAAATATTTGGTTTCACATACGATCTCAAGCTTTCAACGAGGCCTGAGAATTCCTTAGGAGAAAAAGCAACATGGGAGAAAGCTGAAAGTGCCCTTAAGGAAGCTCTGGATGAATTTGGGAAGCCTTGGCAGCTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATTGATATCAATGTATCTGATGCATTGAGTAGGAAATTTCAGTGTGCAACTTTGCAGCTTGATTTCCAACTACCTGATCGTTTTAAGTTGGAATACTCGGCTGAGGATGAAGCCAAGATTGAGAGGCCTGTCATGATACACAGGGCCATTCTAGGATCTGTTGAGCGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTAAGTCCTCGTCAAGCAATTGTTTGCCCTGTGTCAGAGAAATCACAAGCTTATGCAGAGAAGGTGAATGATGAAATCTACAGCAAAGGGTTTCATGTTGATGTTGATTTAACAGATAGGAAGATTCAAAAGAAGGTGCGAGAGGCTCAGCTAGCACAGTACAACTACATCTTGGTTGTTGGAGAGCAGGAAGCTGAAACTGGACAGGTGAGCGTGCGGGTAAGAGATAAGGCGGACCTTACCACTATGAGTATTGAGGGCCTGCTCGAACGGTTCAGTGAAGATGCAAAAAATTTCCGTTGA 2028 0.4541 MVPHPKDEAYLNAAIPKRIKMFESIQAEQKTQRLSLSPDPIKVTLPDGTVKDASKWQTTPFDVAKEISKNLANNALIARVNGVLWDMARPLEQDCELRIYKFEDDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAAGEKQPFERIEVTRDQALEMFSDNKFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGNKDRDTLQRVYGISYPDQKSLKEYLLRLEEAKKYDHRILGVKQELIFHHEWSPGSWFFLPHGALVYNKLIDFIRSQYRVRRYREVISPNVFNMDLWEQSGHAANYKENMFTLEIEKHEFGLKPMNCPGHCLAFKQRVRSYRELPLRMADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVREALKFIDYVYEIFGFTYDLKLSTRPENSLGEKATWEKAESALKEALDEFGKPWQLNEGDGAFYGPKIDINVSDALSRKFQCATLQLDFQLPDRFKLEYSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQAYAEKVNDEIYSKGFHVDVDLTDRKIQKKVREAQLAQYNYILVVGEQEAETGQVSVRVRDKADLTTMSIEGLLERFSEDAKNFR 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01528 675 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 307 573 IPR006195 -
Aip05g01528 675 Pfam TGS domain 41 101 IPR004095 -
Aip05g01528 675 Gene3D - 39 99 IPR012675 -
Aip05g01528 675 Hamap Threonine--tRNA ligase [thrS]. 106 673 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Aip05g01528 675 Gene3D Bira Bifunctional Protein; Domain 2 262 570 IPR045864 -
Aip05g01528 675 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 209 258 IPR012947 GO:0004812|GO:0005524|GO:0043039
Aip05g01528 675 CDD ThrRS_core 282 578 IPR033728 -
Aip05g01528 675 Gene3D - 571 675 IPR036621 -
Aip05g01528 675 ProSiteProfiles TGS domain profile. 39 101 IPR004095 -
Aip05g01528 675 TIGRFAM thrS: threonine--tRNA ligase 112 669 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Aip05g01528 675 PANTHER THREONINE-TRNA LIGASE 3 670 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Aip05g01528 675 Pfam Anticodon binding domain 580 669 IPR004154 -
Aip05g01528 675 SMART tRNA_SAD_4 209 258 IPR012947 GO:0004812|GO:0005524|GO:0043039
Aip05g01528 675 SUPERFAMILY Class II aaRS and biotin synthetases 282 565 IPR045864 -
Aip05g01528 675 CDD TGS_ThrRS 41 106 - -
Aip05g01528 675 CDD ThrRS_anticodon 578 667 - -
Aip05g01528 675 SUPERFAMILY TGS-like 41 101 IPR012676 -
Aip05g01528 675 SUPERFAMILY Class II aaRS ABD-related 566 671 - -
Aip05g01528 675 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 3 670 - -
Aip05g01528 675 PRINTS Threonyl-tRNA synthetase signature 401 424 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Aip05g01528 675 PRINTS Threonyl-tRNA synthetase signature 502 530 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Aip05g01528 675 PRINTS Threonyl-tRNA synthetase signature 573 585 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Aip05g01528 675 PRINTS Threonyl-tRNA synthetase signature 368 396 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Aip05g01528 675 PRINTS Threonyl-tRNA synthetase signature 546 559 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Aip05g01528 675 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 357 568 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Aip05g01528 675 Gene3D - 104 261 - -
Aip05g01528 675 SUPERFAMILY ThrRS/AlaRS common domain 103 280 IPR018163 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01528 Aip-Chr5 25661171 25669309 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01528 K01868 - gmx:100812652 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01528 05 25661171 25669309 Aip05g01528 05 25661171 25669309 ECH